Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_D21
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    29   5.6  

>Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical
           protein F55C5.4 protein.
          Length = 1010

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 615 FGHALERFTTINPVVGMTFMGALYRNLGPTNFLENSTANSIDFHLRRIYPVI 770
           F HA +   +++ +V     G LYR L   N++  S+A  + F+    YP+I
Sbjct: 161 FAHAKKLDKSVDEMVTRLLNGCLYRALDAPNYIVQSSAAEVFFN---FYPLI 209


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +1

Query: 394 NRLQNVNKINKKEGKAFLINCYRRSLHLLKRN 489
           N ++N +K+ + +GK  ++N   +SLH+++RN
Sbjct: 419 NFIKNADKLLEVKGKLEIMNNVMKSLHVVRRN 450


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,333,486
Number of Sequences: 27780
Number of extensions: 373459
Number of successful extensions: 913
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)