Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_D20
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   206   1e-53
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   206   1e-53
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773...    28   9.2  
08_01_0680 - 5958066-5960253,5960707-5961503                           28   9.2  

>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  206 bits (504), Expect = 1e-53
 Identities = 97/195 (49%), Positives = 130/195 (66%)
 Frame = +1

Query: 169 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 348
           QDKNKYNTPKYR +   +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40  QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96

Query: 349 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 528
           Y TG                          +Y VEP D     FR  LDVGL RTTTG R
Sbjct: 97  YCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNR 155

Query: 529 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDS 708
           VFGA+KGA+DGGL++PHS KRF G+  + K+ ++++HR +I+G HVA+YM S+ +++ + 
Sbjct: 156 VFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEK 215

Query: 709 FKRQFXKYIKLGVTA 753
           F+  F +Y+K G+ A
Sbjct: 216 FQAHFSEYLKKGIDA 230


>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  206 bits (504), Expect = 1e-53
 Identities = 97/195 (49%), Positives = 130/195 (66%)
 Frame = +1

Query: 169 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 348
           QDKNKYNTPKYR +   +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40  QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96

Query: 349 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 528
           Y TG                          +Y VEP D     FR  LDVGL RTTTG R
Sbjct: 97  YCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNR 155

Query: 529 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDS 708
           VFGA+KGA+DGGL++PHS KRF G+  + K+ ++++HR +I+G HVA+YM S+ +++ + 
Sbjct: 156 VFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEK 215

Query: 709 FKRQFXKYIKLGVTA 753
           F+  F +Y+K G+ A
Sbjct: 216 FQAHFSEYLKKGIDA 230


>08_02_1410 -
           26876243-26876497,26877129-26877239,26877240-26877324,
           26877620-26877672,26878318-26878440,26878514-26878597,
           26878708-26878773,26879512-26879584,26879854-26879888,
           26879970-26880212
          Length = 375

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 181 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 303
           +YNT +YR +  +S K V C+ +   +  E DH+   A S  L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316


>08_01_0680 - 5958066-5960253,5960707-5961503
          Length = 994

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 148 LVNASLVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHE 300
           L+N SL+Q +      KY  +V     D+   +  SR   D+ +C AY+ E
Sbjct: 470 LINRSLIQPEET----KYGEVVSCRVHDMMLDLILSRCAEDNFICVAYNLE 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,952,542
Number of Sequences: 37544
Number of extensions: 375752
Number of successful extensions: 781
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)