Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_D18
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    26   0.52 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   4.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 126 SWIFXYFGYP*ACGTQNSDITGIKDDVEQTIERTP 22
           +W       P  C T+N D T I  D+   I +TP
Sbjct: 13  TWELNATNSPHTCRTKNGDYTKIMPDILTAIGQTP 47


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
 Frame = +3

Query: 675 TEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALT------ALLADDNKFG 812
           T  GKEK     + P    ++  +L   +FH+ A +      + LAD  +FG
Sbjct: 380 TVRGKEKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLADGARFG 431


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
 Frame = +3

Query: 675 TEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALT------ALLADDNKFG 812
           T  GKEK     + P    ++  +L   +FH+ A +      + LAD  +FG
Sbjct: 380 TVRGKEKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLADGARFG 431


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +3

Query: 600 SVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEAL 779
           +  H+LK    V P+ + +   T     G    V++  +   P+NT +Y+ D+K   +AL
Sbjct: 164 NTSHQLKQV--VMPHDIAVNAST-----GNGGLVSLVVQAMDPVNTIVYMADDK--GDAL 214

Query: 780 TALLADDNKF 809
                 D  F
Sbjct: 215 IVYQNSDESF 224


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 656 YN*AVWWHFSVQLESVLYRSNCA 588
           YN AVW  F+V  +  LY  + A
Sbjct: 123 YNTAVWARFNVNEQMYLYALSVA 145


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 656 YN*AVWWHFSVQLESVLYRSNCA 588
           YN AVW  F+V  +  LY  + A
Sbjct: 123 YNTAVWARFNVNEQMYLYALSVA 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,214
Number of Sequences: 438
Number of extensions: 5354
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)