Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_D16
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    29   0.032
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    24   1.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    24   1.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   6.4  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   8.5  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 29.5 bits (63), Expect = 0.032
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = +3

Query: 126 DKXEVAPE-EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN- 299
           D+ E   E ++     K S     P K V   E   KE   DEA E+   E G+ ++ + 
Sbjct: 186 DQTEFLEEHKIKEIVKKHSQFIGYPIKLVVEKERE-KELSDDEAEEEKKEEEGEDKDKDK 244

Query: 300 ----DASENGDATEKKETGVKRKSV 362
               D  E+ D   KKE   K+K++
Sbjct: 245 PKIEDVGEDEDEDTKKEDKKKKKTI 269


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 231 KENGTDEAPEDSPAENGDAEESNDASENGDATE 329
           +E G DEA  D   EN  A+E    +  GD  +
Sbjct: 21  EEEGGDEATADELCENRPADEYFRLTTEGDCRD 53


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 231 KENGTDEAPEDSPAENGDAEESNDASENGDATE 329
           +E G DEA  D   EN  A+E    +  GD  +
Sbjct: 21  EEEGGDEATADELCENRPADEYFRLTTEGDCRD 53


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -3

Query: 363 PQISSSHQSLSFLWHHRSQMHRCFLRHHHFQQANLLG 253
           P +++   +   + HH  + H    + HH QQ  + G
Sbjct: 155 PPLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYG 191


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -3

Query: 363 PQISSSHQSLSFLWHHRSQMHRCFLRHHHFQQANLLG 253
           P +++   +   + HH  + H    + HH QQ  + G
Sbjct: 157 PPLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYG 193


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 545 CRSGICGCELNSN 507
           C+ G+C  E+NS+
Sbjct: 140 CKKGVCTMEINSD 152


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 138 VAPEEVTSTEPKESPVKKSPAKKVEAAE 221
           VAPEE +S     S +  SPA  + + +
Sbjct: 9   VAPEESSSEVTSSSALVMSPANSLASTD 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,073
Number of Sequences: 336
Number of extensions: 3101
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)