Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_D11
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 434 NPRSSDIRSRYRPV*GNMHPKKSHQPW 354
           +P    IR RY PV  N   +  H+PW
Sbjct: 440 DPNGDYIR-RYLPVLKNFPTRYIHEPW 465


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 657 QSITNTRQFNNRIYLDYNY 601
           ++I N   +NN  Y +YNY
Sbjct: 88  KTIHNNNNYNNNNYNNYNY 106


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 418 IYDHVTGQCKVTCTPKNHTS 359
           IY H T +CK+     +HT+
Sbjct: 169 IYPHDTQECKLQMESLSHTT 188


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 389 LTLAGNVIVYLTILGFFTIFDMDDSD 466
           LTL+GN I  +  L F    D+ + D
Sbjct: 412 LTLSGNAIASIDPLAFRNCSDLKELD 437


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 104 GLVSLAFAGSIGMTFVILACALPQYKLWW 190
           G+V +A   S  +  V  AC  P+Y+ W+
Sbjct: 245 GVVHVAQDESTSLVCVAQACPTPEYR-WY 272


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 104 GLVSLAFAGSIGMTFVILACALPQYKLWW 190
           G+V +A   S  +  V  AC  P+Y+ W+
Sbjct: 245 GVVHVAQDESTSLVCVAQACPTPEYR-WY 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,083
Number of Sequences: 438
Number of extensions: 4546
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)