Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_D08
         (609 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.7  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   4.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   4.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   8.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 109  CSLQYSRCSGNMVPRNC 159
            CS  Y   +G++VP+NC
Sbjct: 1218 CSSFYVCVNGHLVPQNC 1234


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   PADDFLIKFKQRYLNFNMVQDG 69
           P  +F  ++ Q Y N+N  Q+G
Sbjct: 209 PQFNFNYQYNQAYSNYNNYQEG 230


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   PADDFLIKFKQRYLNFNMVQDG 69
           P  +F  ++ Q Y N+N  Q+G
Sbjct: 229 PQFNFNYQYNQAYSNYNNYQEG 250


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 178 EVPLVSSKLPSCTDY*P 228
           E+P V    P C DY P
Sbjct: 625 EMPPVPKDFPQCGDYVP 641


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 193 IPRVLLLVWFDNSFSEPCYRSIDCIVKSIAECSKHIIXQEDFRLV 59
           I  VL  VWF +     C RSID  +K     S + I +  + +V
Sbjct: 6   ITDVLKHVWFLSKLFLLCPRSIDEKIKRQERHSFYKIYKYTYNIV 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,457
Number of Sequences: 336
Number of extensions: 2718
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)