Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_D08
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79600-3|CAB01876.1| 260|Caenorhabditis elegans Hypothetical pr... 151 3e-37
AF098995-12|AAC67485.1| 406|Caenorhabditis elegans Hypothetical... 29 2.0
AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical... 28 6.0
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 28 6.0
AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical ... 28 6.0
Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical pr... 27 7.9
AC006631-1|AAF39793.2| 787|Caenorhabditis elegans Hypothetical ... 27 7.9
AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical ... 27 7.9
>Z79600-3|CAB01876.1| 260|Caenorhabditis elegans Hypothetical
protein F59C6.5 protein.
Length = 260
Score = 151 bits (367), Expect = 3e-37
Identities = 69/158 (43%), Positives = 98/158 (62%), Gaps = 2/158 (1%)
Frame = +2
Query: 56 WYKTEILLXDNVFRAFCNALYNTVDAPVTWFRETVVEP--NQKKYPWYHQNYRRVPTIDQ 229
W +I +++ F + DAP TWFRET+V+P N+ + P+YH+ RVP ID+
Sbjct: 21 WKVRDIDSRGSIYPRFRYYAHKAFDAPATWFRETIVQPLNNKNRLPYYHRQLTRVPEIDE 80
Query: 230 CYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSAE 409
C +D C +EAN Q++ D+ VD IL LRQR + CM+Y PDH + C + + + E
Sbjct: 81 CGVNDKACFYEANEQYRLDKMVDGFILQTLRQRVDRCMLYNNPDH-SPCAKVIEDMEENE 139
Query: 410 EAWFIKYGDLGAYGDARKAYMKQKHRMVWERRNGPLSD 523
+F+KYG+LG D R AYMKQKHRM+WERR+ + D
Sbjct: 140 LNFFMKYGELGGESDVRDAYMKQKHRMIWERRHPEIMD 177
>AF098995-12|AAC67485.1| 406|Caenorhabditis elegans Hypothetical
protein F58E1.12 protein.
Length = 406
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 405 LRKLGSLNMVTSVLMVMREKLT*SRSIAWSGNDAMVPYQTLQSDQLKQ 548
L +LGS+++ T + E L RS W+GN A+ + +Q++Q
Sbjct: 74 LDQLGSVDLTTVLEQRPEEILVDGRSFRWNGNSAVKLKDQSECEQIRQ 121
>AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32b protein.
Length = 216
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 440 GAYGDARKAYMKQKHRMVWERRNGPLSDLTK*SIKAVINSR 562
GAYGD Y + + +W++ GP D T ++SR
Sbjct: 75 GAYGDVGSVYGIAQQKRIWQKPRGP--DATSEEFAHSVSSR 113
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 440 GAYGDARKAYMKQKHRMVWERRNGPLSDLTK*SIKAVINSR 562
GAYGD Y + + +W++ GP D T ++SR
Sbjct: 243 GAYGDVGSVYGIAQQKRIWQKPRGP--DATSEEFAHSVSSR 281
>AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical
protein Y39G10AR.11 protein.
Length = 788
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +2
Query: 278 KRDRAVDSEILSILRQRYEDCMMYEQPDHAT-----KCRSLWDKYKSAEEAWFIKYGDLG 442
+++ ++ ++ ++L Q +C +Y+ + + R D YK E F K+GDL
Sbjct: 541 EQNEGLEEKVENVLAQYRSECELYQNSVSSLQMDRDRLRKDVDLYKGKAEILFTKFGDLV 600
Query: 443 AYGD--ARKAYMK 475
D +KA+ K
Sbjct: 601 KTNDELEKKAHQK 613
>Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 224 DQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYE 334
D+ YDD+ E NA+F + DS+ I+ R E
Sbjct: 119 DEAYDDEEDFTVETNAEFNENSLDDSDEYPIVPNRQE 155
>Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 224 DQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYE 334
D+ YDD+ E NA+F + DS+ I+ R E
Sbjct: 119 DEAYDDEEDFTVETNAEFNENSLDDSDEYPIVPNRQE 155
>AC006631-1|AAF39793.2| 787|Caenorhabditis elegans Hypothetical
protein F27B3.5 protein.
Length = 787
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 284 DRAVDSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSAEEAWFIKYG 433
D A + S+ + + E M+E T C L DKY + WF ++G
Sbjct: 273 DLAFPKLLESVSQNKLETIDMFEAVAECTYC-CLLDKYLELVQVWFPQFG 321
>AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical
protein C09E7.7 protein.
Length = 995
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 284 DRAVDSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSAEEAWFIKYG 433
D A + S+ + + E M+E T C L DKY + WF ++G
Sbjct: 480 DLAFPKLLESVSQNKLETIDMFEAVAECTYC-CLLDKYLELVQVWFPQFG 528
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,113
Number of Sequences: 27780
Number of extensions: 264725
Number of successful extensions: 647
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -