Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_D02
(759 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9BZS6 Cluster: SSU72 RNA polymerase II CTD phosphatase... 255 8e-67
UniRef50_Q4RXN5 Cluster: Chromosome 11 SCAF14979, whole genome s... 177 2e-61
UniRef50_Q22453 Cluster: Putative uncharacterized protein; n=2; ... 219 8e-56
UniRef50_UPI00005A3F7F Cluster: PREDICTED: similar to Ssu72 RNA ... 193 3e-48
UniRef50_O42868 Cluster: RNA polymerase II subunit A C-terminal ... 188 1e-46
UniRef50_UPI0000F31DDA Cluster: UPI0000F31DDA related cluster; n... 181 2e-44
UniRef50_P53538 Cluster: RNA polymerase II subunit A C-terminal ... 173 5e-42
UniRef50_Q2QX64 Cluster: Ssu72-like protein, expressed; n=3; Ory... 160 4e-38
UniRef50_Q558Z3 Cluster: Putative uncharacterized protein; n=1; ... 155 1e-36
UniRef50_Q8SRQ6 Cluster: SSU72 PROTEIN HOMOLOG; n=1; Encephalito... 146 4e-34
UniRef50_Q6BYP7 Cluster: RNA polymerase II subunit A C-terminal ... 143 4e-33
UniRef50_Q5SV18 Cluster: SSU72 RNA polymerase II CTD phosphatase... 140 3e-32
UniRef50_Q4WHY5 Cluster: RNA polymerase II subunit A C-terminal ... 136 7e-31
UniRef50_Q00U02 Cluster: Protein involved in transcription start... 132 1e-29
UniRef50_UPI00004982BE Cluster: conserved hypothetical protein; ... 130 3e-29
UniRef50_A2FVC5 Cluster: SSU72 protein-related protein; n=1; Tri... 110 3e-23
UniRef50_Q9H933 Cluster: CDNA FLJ13048 fis, clone NT2RP3001399, ... 104 3e-21
UniRef50_UPI0000F20D86 Cluster: PREDICTED: hypothetical protein;... 99 1e-19
UniRef50_A5GAI1 Cluster: Putative uncharacterized protein precur... 37 0.62
UniRef50_A7AZY7 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_UPI00006CEB56 Cluster: hypothetical protein TTHERM_0037... 35 2.5
UniRef50_Q8IFP9 Cluster: Putative uncharacterized protein PFD103... 34 4.4
UniRef50_Q6F7W4 Cluster: Putative uncharacterized protein; n=2; ... 33 5.8
UniRef50_Q93GC2 Cluster: GlyA; n=1; Xanthomonas campestris|Rep: ... 33 5.8
UniRef50_Q6W1J7 Cluster: Transcriptional regulatory protein; n=1... 33 5.8
UniRef50_UPI0000499114 Cluster: hypothetical protein 28.t00032; ... 33 7.7
UniRef50_A0Q5G6 Cluster: Putative uncharacterized protein; n=7; ... 33 7.7
UniRef50_Q23B16 Cluster: Putative uncharacterized protein; n=1; ... 33 7.7
UniRef50_Q6C425 Cluster: Similar to DEHA0F21252g Debaryomyces ha... 33 7.7
>UniRef50_Q9BZS6 Cluster: SSU72 RNA polymerase II CTD phosphatase
homolog; n=70; Eukaryota|Rep: SSU72 RNA polymerase II
CTD phosphatase homolog - Homo sapiens (Human)
Length = 194
Score = 255 bits (625), Expect = 8e-67
Identities = 116/190 (61%), Positives = 145/190 (76%)
Frame = +1
Query: 190 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 369
S L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD+
Sbjct: 4 SPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQ 63
Query: 370 IYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWF 549
+YNDL+ KDK YTQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E
Sbjct: 64 MYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDL 123
Query: 550 GSRRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIXELLHEFESXC 729
SR QPVHVVN+DIQDNHEEAT+GAFLI ++ + ++D++N+I ELL EFE
Sbjct: 124 NSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEERV 183
Query: 730 HRPILNCIMF 759
R L+ + F
Sbjct: 184 GRTFLHTVCF 193
>UniRef50_Q4RXN5 Cluster: Chromosome 11 SCAF14979, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 11
SCAF14979, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 231
Score = 177 bits (430), Expect(2) = 2e-61
Identities = 77/116 (66%), Positives = 95/116 (81%)
Frame = +1
Query: 196 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 375
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F Y ++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPTPDKPNVYDFKTTYVQMY 65
Query: 376 NDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIE 543
NDL+ KDK YTQNG+LHMLDRN+RIK PE+FQ C +RFD+++TCEERVYDQV+E
Sbjct: 66 NDLVRKDKELYTQNGILHMLDRNKRIKSKPERFQNCKDRFDLVVTCEERVYDQVVE 121
Score = 82.6 bits (195), Expect(2) = 2e-61
Identities = 36/69 (52%), Positives = 50/69 (72%)
Frame = +1
Query: 553 SRRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIXELLHEFESXCH 732
SR QPVHV+N+DIQDNHEEAT+GAFLI ++ + ++D++N+I ELL EFE +
Sbjct: 162 SREQETLQPVHVINVDIQDNHEEATLGAFLICELCQCIEHTEDMENEIEELLQEFEEKSN 221
Query: 733 RPILNCIMF 759
RP L+ + F
Sbjct: 222 RPFLHTVCF 230
>UniRef50_Q22453 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 235
Score = 219 bits (534), Expect = 8e-56
Identities = 100/192 (52%), Positives = 137/192 (71%), Gaps = 2/192 (1%)
Frame = +1
Query: 190 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFG-VLYD 366
S L AV CSSNMNRSMEAH L K+GFN++SYG+G +VK+PG + D+PNCYEFG Y+
Sbjct: 43 SKLRFAVSCSSNMNRSMEAHGILKKRGFNIESYGSGNQVKMPGPTVDKPNCYEFGPTTYE 102
Query: 367 EIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEW 546
+IY DL KD + YTQNGLLHM+DRNRRIK P++FQ FD+++ EERV+DQV+++
Sbjct: 103 DIYADLTNKDLHLYTQNGLLHMVDRNRRIKSRPQRFQAETREFDIVLCLEERVFDQVVDF 162
Query: 547 FGSRRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIXELLHEF-ES 723
PVHV+NIDI+DN EEAT GAF ++D+ K+ +S+D + DI +++ + E+
Sbjct: 163 LNRSVGKSGNPVHVINIDIEDNAEEATFGAFFVADLCEKLERSEDFEEDIDQIITDLEEN 222
Query: 724 XCHRPILNCIMF 759
R +L+ I F
Sbjct: 223 NPKRNLLHTICF 234
>UniRef50_UPI00005A3F7F Cluster: PREDICTED: similar to Ssu72 RNA
polymerase II CTD phosphatase homolog; n=3;
Laurasiatheria|Rep: PREDICTED: similar to Ssu72 RNA
polymerase II CTD phosphatase homolog - Canis familiaris
Length = 246
Score = 193 bits (471), Expect = 3e-48
Identities = 90/173 (52%), Positives = 122/173 (70%)
Frame = +1
Query: 190 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 369
S L VAVVCSSNMNRSMEAH L K+GF V+S+G +VKLPG + P Y+F Y +
Sbjct: 29 SPLRVAVVCSSNMNRSMEAHDILQKRGFCVRSFGVARQVKLPGLIRNCPVLYDFSTTYKQ 88
Query: 370 IYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWF 549
+Y DL K++ Y+ NG+L +L RN+RIKP PE+FQ C++ FDVI TCEERVYD+V++
Sbjct: 89 MYKDLWRKNRECYSSNGILQLLGRNQRIKPHPERFQECSDPFDVIFTCEERVYDRVVQDL 148
Query: 550 GSRRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIXELL 708
+R QP+HVVN+DI D EEAT+GAFLI + + Q+ D+++ + +LL
Sbjct: 149 CAREQATFQPLHVVNVDIVDTLEEATLGAFLIYRLCQSLQQAGDMEDSLGQLL 201
>UniRef50_O42868 Cluster: RNA polymerase II subunit A C-terminal
domain phosphatase ssu72; n=7; Fungi/Metazoa group|Rep:
RNA polymerase II subunit A C-terminal domain
phosphatase ssu72 - Schizosaccharomyces pombe (Fission
yeast)
Length = 197
Score = 188 bits (459), Expect = 1e-46
Identities = 89/192 (46%), Positives = 129/192 (67%), Gaps = 2/192 (1%)
Frame = +1
Query: 190 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 369
++L ++V+C+SN NRSMEAH L G+ V S+GTG V+LPG S D+PN Y+FG YDE
Sbjct: 5 TNLQISVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDE 64
Query: 370 IYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWF 549
IY +L +D YT NGLL MLDRNRRIK P ++Q + ++++ITCEER YD + E
Sbjct: 65 IYKELEAQDSRLYTANGLLKMLDRNRRIKRAPCRWQDQDSIYNIVITCEERCYDAICEDL 124
Query: 550 GSRRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDD-LDNDIXELLHEFESX 726
R N+PV+++N+DI+DNHEEA++G I D+V K+ ++ D L+ ++ +F+S
Sbjct: 125 YRRGETLNRPVYLINVDIKDNHEEASVGGKAILDLVNKLTEAQDKLEELFPSIMADFQSN 184
Query: 727 CHR-PILNCIMF 759
+ P+L I F
Sbjct: 185 HPKLPVLYTIHF 196
>UniRef50_UPI0000F31DDA Cluster: UPI0000F31DDA related cluster; n=1;
Bos taurus|Rep: UPI0000F31DDA UniRef100 entry - Bos
Taurus
Length = 218
Score = 181 bits (440), Expect = 2e-44
Identities = 80/151 (52%), Positives = 107/151 (70%)
Frame = +1
Query: 202 VAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYND 381
VAVVC SNMNRSMEAH L +KGF V+S+G G +V+LPG + + P Y F Y+E+ D
Sbjct: 11 VAVVCMSNMNRSMEAHRILRRKGFRVRSFGAGSRVRLPGRARNLPVVYNFSTTYEEMRKD 70
Query: 382 LMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRR 561
L+ KD+ Y NG+LH+L RN RIKP PE+FQ C + FDVI TC E VY++V+E R
Sbjct: 71 LVRKDRQRYNSNGILHILGRNERIKPRPERFQECRDHFDVIFTCAESVYNKVVEELWVRE 130
Query: 562 SIYNQPVHVVNIDIQDNHEEATIGAFLISDM 654
QPVHV+N+D+ DN E+AT+G+F+I ++
Sbjct: 131 QETFQPVHVINVDMADNLEDATLGSFIICEL 161
>UniRef50_P53538 Cluster: RNA polymerase II subunit A C-terminal
domain phosphatase SSU72; n=7; Saccharomycetales|Rep:
RNA polymerase II subunit A C-terminal domain
phosphatase SSU72 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 206
Score = 173 bits (420), Expect = 5e-42
Identities = 88/186 (47%), Positives = 123/186 (66%), Gaps = 8/186 (4%)
Frame = +1
Query: 190 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 369
S+L VC+SN NRSME+H L + G+NV SYGTG V+LPG S D+PN Y FG Y++
Sbjct: 7 SNLKFCTVCASNNNRSMESHKVLQEAGYNVSSYGTGSAVRLPGLSIDKPNVYSFGTPYND 66
Query: 370 IYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWF 549
IYNDL+ + + Y NGLL MLDRNRR+K PEK+Q + FD + TCEER +D V E
Sbjct: 67 IYNDLLSQSADRYKSNGLLQMLDRNRRLKKAPEKWQESTKVFDFVFTCEERCFDAVCEDL 126
Query: 550 GSRRSIYNQPVHVVNIDIQDNHEEATIG--AFL-ISDMVT---KMAQSDDL--DNDIXEL 705
+R N+ VHV+N+DI+D+ E A IG A L ++DM+ + + DD+ ++ I ++
Sbjct: 127 MNRGGKLNKIVHVINVDIKDDDENAKIGSKAILELADMLNDKIEQCEKDDIPFEDCIMDI 186
Query: 706 LHEFES 723
L E++S
Sbjct: 187 LTEWQS 192
>UniRef50_Q2QX64 Cluster: Ssu72-like protein, expressed; n=3; Oryza
sativa|Rep: Ssu72-like protein, expressed - Oryza sativa
subsp. japonica (Rice)
Length = 200
Score = 160 bits (388), Expect = 4e-38
Identities = 82/182 (45%), Positives = 116/182 (63%), Gaps = 3/182 (1%)
Frame = +1
Query: 205 AVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDL 384
A+VCSSNMNRSMEAH+ L + G +V SYGTG VKLPG S PN Y+FG Y+ IY+DL
Sbjct: 12 AMVCSSNMNRSMEAHSLLGRAGLDVASYGTGTHVKLPGPSLHEPNVYDFGTPYNVIYDDL 71
Query: 385 MEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQ--VCNERFDVIITCEERVYDQVIEWFGSR 558
KD + Y +NGLL ML RN +K P+++Q + FDVI + EERV+D +++ +R
Sbjct: 72 RRKDPDLYKRNGLLPMLKRNTSVKLAPQRWQDNAGDGLFDVIFSFEERVFDLIVDDMHNR 131
Query: 559 RSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSD-DLDNDIXELLHEFESXCHR 735
+ ++N+D++DNHEEA +GA L D+ K+ +D D + I +L+ FE R
Sbjct: 132 EQRMLKNALIINMDVKDNHEEAGVGAKLALDLCQKLEGADEDWEEIIDDLIITFEKQHKR 191
Query: 736 PI 741
+
Sbjct: 192 KL 193
>UniRef50_Q558Z3 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 214
Score = 155 bits (376), Expect = 1e-36
Identities = 77/190 (40%), Positives = 119/190 (62%), Gaps = 4/190 (2%)
Frame = +1
Query: 202 VAVVCSSNMNRSMEAHAFLVKKGF-NVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYN 378
+A+VC+SN NRS+EAH VK GF N++S+GT KLPG S +PN + FG Y EIY
Sbjct: 24 IAMVCASNQNRSLEAHHLFVKNGFKNIRSFGTSAHCKLPGPSIHQPNIFSFGTPYQEIYT 83
Query: 379 DLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNE-RFDVIITCEERVYDQVIEWFGS 555
L +D+ Y +NGLL+ML+RN +K PEK+Q + +F+++ T ++RVYD VIE
Sbjct: 84 SLKNQDQELYIRNGLLNMLERNISVKLAPEKWQEEQQSKFEIVYTFDQRVYDAVIEDLLQ 143
Query: 556 R--RSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIXELLHEFESXC 729
R S QPVH++N+ ++D HEEA GA ++ + + ++ + + + ++L +F
Sbjct: 144 RDVSSSLLQPVHIINLQVKDTHEEAVGGAQHALEITSIIEKTLNWEEKLDQILEDFYKQT 203
Query: 730 HRPILNCIMF 759
R L+ +MF
Sbjct: 204 SRQFLHTLMF 213
>UniRef50_Q8SRQ6 Cluster: SSU72 PROTEIN HOMOLOG; n=1;
Encephalitozoon cuniculi|Rep: SSU72 PROTEIN HOMOLOG -
Encephalitozoon cuniculi
Length = 193
Score = 146 bits (355), Expect = 4e-34
Identities = 68/160 (42%), Positives = 102/160 (63%)
Frame = +1
Query: 202 VAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYND 381
+AV C+ N NRSM+ H L KKG VKS+GT +KLPG + D+PN Y FGV Y +IY+D
Sbjct: 6 LAVTCAMNQNRSMQTHDLLAKKGIPVKSFGTNPVIKLPGETMDKPNVYNFGVTYQQIYDD 65
Query: 382 LMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRR 561
L K++++Y ++G+L++L+RN +K PE F +E FD++ITCEERV+ + E++
Sbjct: 66 LCMKNEDHYRESGILYLLERNMGVKERPENFFQRSEDFDLVITCEERVFTSIFEYYADAP 125
Query: 562 SIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDD 681
S Q +VN DI+D +A GA I + V + ++
Sbjct: 126 SC-TQCFFMVNFDIRDTPSDAIAGAQEILEFVEDVLAKEE 164
>UniRef50_Q6BYP7 Cluster: RNA polymerase II subunit A C-terminal
domain phosphatase SSU72; n=4; Saccharomycetales|Rep:
RNA polymerase II subunit A C-terminal domain
phosphatase SSU72 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 223
Score = 143 bits (347), Expect = 4e-33
Identities = 77/185 (41%), Positives = 111/185 (60%), Gaps = 10/185 (5%)
Frame = +1
Query: 196 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 375
L + VC++N NRSME+H L G+NV+S+GTG V+LPG D+PN YEFG YD+IY
Sbjct: 6 LKICTVCAANNNRSMESHKQLKDAGYNVRSFGTGSAVRLPGPLVDKPNVYEFGTPYDDIY 65
Query: 376 NDLMEKD-KNYYTQNGLLHMLDRNRRIKPCPEKF--QVCNERFDVIITCEERVYDQVIEW 546
DL ++ Y NGL+ M++RNR IK PEK+ +FD++ITCEER +D V++
Sbjct: 66 RDLTSQEYHKMYESNGLIRMINRNRHIKRAPEKWHNNASAGKFDLVITCEERCFDLVLDD 125
Query: 547 FGSR-------RSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIXEL 705
R + Q VH++NIDI+D++E A IG I +V + + + N L
Sbjct: 126 LMVRLVNKDQADTEIKQAVHIINIDIKDDYENAVIGGKGILKLVNMIHEFRN-TNKQRRL 184
Query: 706 LHEFE 720
H+F+
Sbjct: 185 DHDFD 189
>UniRef50_Q5SV18 Cluster: SSU72 RNA polymerase II CTD phosphatase
homolog; n=9; Euteleostomi|Rep: SSU72 RNA polymerase II
CTD phosphatase homolog - Homo sapiens (Human)
Length = 111
Score = 140 bits (340), Expect = 3e-32
Identities = 64/110 (58%), Positives = 82/110 (74%)
Frame = +1
Query: 430 MLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQD 609
MLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E SR QPVHVVN+DIQD
Sbjct: 1 MLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQD 60
Query: 610 NHEEATIGAFLISDMVTKMAQSDDLDNDIXELLHEFESXCHRPILNCIMF 759
NHEEAT+GAFLI ++ + ++D++N+I ELL EFE R L+ + F
Sbjct: 61 NHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCF 110
>UniRef50_Q4WHY5 Cluster: RNA polymerase II subunit A C-terminal
domain phosphatase ssu72; n=16; Pezizomycotina|Rep: RNA
polymerase II subunit A C-terminal domain phosphatase
ssu72 - Aspergillus fumigatus (Sartorya fumigata)
Length = 287
Score = 136 bits (328), Expect = 7e-31
Identities = 77/181 (42%), Positives = 104/181 (57%), Gaps = 24/181 (13%)
Frame = +1
Query: 196 LYVAVVCSSNMNRSMEAHAFL--VKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVL-YD 366
L VC+SN NRSMEAH L F V S+GTG V+LPG S +PN Y F Y
Sbjct: 53 LKFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTGSLVRLPGPSITQPNVYNFNTTSYS 112
Query: 367 EIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQ---------------------VC 483
++Y++L+ KD+ Y NGLL+MLDRNR +K PE+FQ
Sbjct: 113 QMYDELLAKDERLYRNNGLLNMLDRNRNLKWGPERFQDWVPGMPRVDHVSKGDKGALGTE 172
Query: 484 NERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTK 663
DVIITCEER +D V++ ++ + N+PVHV N+DI+DNHEEA +G I ++ T+
Sbjct: 173 GGTVDVIITCEERCWDAVVDDLMNKGAALNRPVHVFNVDIRDNHEEALVGGKAILELATR 232
Query: 664 M 666
+
Sbjct: 233 L 233
>UniRef50_Q00U02 Cluster: Protein involved in transcription start
site selection; n=2; Ostreococcus|Rep: Protein involved
in transcription start site selection - Ostreococcus
tauri
Length = 205
Score = 132 bits (318), Expect = 1e-29
Identities = 76/203 (37%), Positives = 117/203 (57%), Gaps = 8/203 (3%)
Frame = +1
Query: 175 SNLKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEF- 351
S+ S A VC++N NRSMEAH L++ GF+VKSYG +VKLPGAS D PN Y+F
Sbjct: 3 SSTSRSGYRYACVCAANFNRSMEAHRVLLENGFDVKSYGAASRVKLPGASRDDPNVYDFD 62
Query: 352 GVLYDEIYNDLMEKDKNY---YTQNGLLHMLDRNRRIKPCPEKFQVCNER---FDVIITC 513
G Y+EI DL + ++ Y + G+ ML RN +IK CPE+++ ER FDVI+
Sbjct: 63 GTSYEEILRDLRSQSEDLVKNYEERGMFDMLVRNAKIKRCPERWKTHRERGETFDVIVCF 122
Query: 514 EERVYDQVIEWFGSRRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDD-LDN 690
EERV+D V+ + + + VVN+D++D++E + A + ++ + ++ +
Sbjct: 123 EERVFDLVVMDLRAAGGARDAAL-VVNLDVRDSYEGSAEAAPRALRLCERLERCEEGWEG 181
Query: 691 DIXELLHEFESXCHRPILNCIMF 759
+I ++ EFE L C+ F
Sbjct: 182 EIDSIVDEFEREEGLRALYCVCF 204
>UniRef50_UPI00004982BE Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 201
Score = 130 bits (315), Expect = 3e-29
Identities = 68/176 (38%), Positives = 102/176 (57%), Gaps = 2/176 (1%)
Frame = +1
Query: 202 VAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYND 381
+AV+C SN NRS+ AH L + G+NV S+GTG LPGA+ R ++FG+ Y +I N
Sbjct: 15 IAVICRSNQNRSISAHCRLKQLGYNVSSFGTGVYTILPGAT--RNFGFQFGIPYKDIKNS 72
Query: 382 LMEKDKN--YYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGS 555
L + + + YY +N + MLDRN +K PEKFQ C + F++IIT + V+ V+E+F S
Sbjct: 73 LPKDEASVEYYRKNKIYQMLDRNANLKSAPEKFQDCKKEFNIIITLDYSVFMDVLEYFDS 132
Query: 556 RRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIXELLHEFES 723
R S +V N+ + D + A GA +S+ + M D N+I ++ F S
Sbjct: 133 RESSTGSLCYVFNLTVMDQLDTAEKGAIEVSEFLKLMESDSDWMNNIDHVIKSFYS 188
>UniRef50_A2FVC5 Cluster: SSU72 protein-related protein; n=1;
Trichomonas vaginalis G3|Rep: SSU72 protein-related
protein - Trichomonas vaginalis G3
Length = 204
Score = 110 bits (265), Expect = 3e-23
Identities = 62/181 (34%), Positives = 97/181 (53%), Gaps = 5/181 (2%)
Frame = +1
Query: 190 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 369
+ L A VC+SN+NRSME H L + GFNV SYGT + VK+PGAS + P ++FG Y E
Sbjct: 5 NQLAFACVCASNVNRSMEGHRVLKEAGFNVSSYGTNDYVKMPGAS-NVPLQFDFGATYKE 63
Query: 370 IYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQ-----VCNERFDVIITCEERVYDQ 534
I + + ++ YY + GL+ ML + K PE++ + FDVI T + V D+
Sbjct: 64 ILSKMESENNQYYEEQGLIKMLRDDANTKEKPERWSSTFNPATLKYFDVIFTYDNNVMDR 123
Query: 535 VIEWFGSRRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIXELLHE 714
V+ F + Q HVVNI D+ + A + + ++ + DL ++ ++ +
Sbjct: 124 VLNEFRENGNRTFQISHVVNIQTPDSRDNAILSRQYTLRLAQMLSAATDLTENLESIVDQ 183
Query: 715 F 717
F
Sbjct: 184 F 184
>UniRef50_Q9H933 Cluster: CDNA FLJ13048 fis, clone NT2RP3001399,
weakly similar to SSU72 PROTEIN (Ssu72 RNA polymerase II
CTD phosphatase homolog (Yeast), isoform CRA_a); n=1;
Homo sapiens|Rep: CDNA FLJ13048 fis, clone NT2RP3001399,
weakly similar to SSU72 PROTEIN (Ssu72 RNA polymerase II
CTD phosphatase homolog (Yeast), isoform CRA_a) - Homo
sapiens (Human)
Length = 153
Score = 104 bits (249), Expect = 3e-21
Identities = 46/73 (63%), Positives = 56/73 (76%)
Frame = +1
Query: 190 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 369
S L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD+
Sbjct: 4 SPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQ 63
Query: 370 IYNDLMEKDKNYY 408
+YNDL+ KDK Y
Sbjct: 64 MYNDLLRKDKELY 76
>UniRef50_UPI0000F20D86 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 228
Score = 98.7 bits (235), Expect = 1e-19
Identities = 43/68 (63%), Positives = 54/68 (79%)
Frame = +1
Query: 196 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 375
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F Y+++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMY 65
Query: 376 NDLMEKDK 399
NDL+ KDK
Sbjct: 66 NDLVRKDK 73
>UniRef50_A5GAI1 Cluster: Putative uncharacterized protein
precursor; n=1; Geobacter uraniumreducens Rf4|Rep:
Putative uncharacterized protein precursor - Geobacter
uraniumreducens Rf4
Length = 195
Score = 36.7 bits (81), Expect = 0.62
Identities = 30/98 (30%), Positives = 42/98 (42%)
Frame = +1
Query: 181 LKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVL 360
L+ SD AV SS S + L+ + SYG G + L GA A P F L
Sbjct: 82 LQPSDTNGAVSSSSGPIVSGISEEVLLSSANFIGSYGNGSHIDLSGAVASMPGNDFFDGL 141
Query: 361 YDEIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKF 474
+D +++D + D +G H D N + P P F
Sbjct: 142 FDGLFDDFFDNDHGPGNNDGGGH--DNNAPV-PEPASF 176
>UniRef50_A7AZY7 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus gnavus ATCC 29149|Rep: Putative
uncharacterized protein - Ruminococcus gnavus ATCC 29149
Length = 305
Score = 35.5 bits (78), Expect = 1.4
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +1
Query: 343 YEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEER 522
YEF V + Y D+++ KN+ ++ G+L++ + NR++ + F CN F ++ C
Sbjct: 118 YEFAVHETKTY-DVIQDVKNFKSEIGILYVNEFNRKV--LTKLFHECNLEFHELLKCSIY 174
Query: 523 VY 528
VY
Sbjct: 175 VY 176
>UniRef50_UPI00006CEB56 Cluster: hypothetical protein
TTHERM_00370820; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00370820 - Tetrahymena
thermophila SB210
Length = 1792
Score = 34.7 bits (76), Expect = 2.5
Identities = 13/63 (20%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +1
Query: 475 QVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVH-VVNIDIQDNHEEATIGAFLISD 651
+ C ++ +I C + Q++ +FG+++S + V+ + + I +NH+ + F++++
Sbjct: 447 KACKDKSQSLIVCSLTLLFQLLIYFGTQKSQFAPNVYRTLTLSIIENHQNVVVREFIMNN 506
Query: 652 MVT 660
+T
Sbjct: 507 FIT 509
>UniRef50_Q8IFP9 Cluster: Putative uncharacterized protein PFD1030c;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PFD1030c - Plasmodium falciparum
(isolate 3D7)
Length = 1686
Score = 33.9 bits (74), Expect = 4.4
Identities = 23/123 (18%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Frame = +1
Query: 391 KDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIY 570
++ N+YT L N+ K EK + E++ I ++ +++ + + Y
Sbjct: 276 QENNFYTVVENLKRDLTNQMKKKIREKKNIIKEKWTNIKNTFTQINEEMKLFISNFEKKY 335
Query: 571 NQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI--XELLHEFESXCHRPIL 744
N+ ++++NI+ +D ++ T + + + ++ +N + +LL+ F + +
Sbjct: 336 NESINMINIETEDFEKKLTQNIYFNKIEINNLIHKENENNKLFFLQLLNSFNDYIMK-LY 394
Query: 745 NCI 753
NCI
Sbjct: 395 NCI 397
>UniRef50_Q6F7W4 Cluster: Putative uncharacterized protein; n=2;
Acinetobacter|Rep: Putative uncharacterized protein -
Acinetobacter sp. (strain ADP1)
Length = 232
Score = 33.5 bits (73), Expect = 5.8
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +1
Query: 487 ERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHV-VNIDIQDNHEEATIGAFLISDMVTK 663
ERFDV+ ++ +Y + W G RSI V VN + + E +G +++
Sbjct: 146 ERFDVVKVRDDLLYLDLNRWLGKNRSIIETLAKVHVNHAVLRDAELVVMGNV---NLMAL 202
Query: 664 MAQSDDLDNDIXELLHEFES 723
++S DLD++ E L ES
Sbjct: 203 FSKSSDLDDESEEKLEISES 222
>UniRef50_Q93GC2 Cluster: GlyA; n=1; Xanthomonas campestris|Rep:
GlyA - Xanthomonas campestris
Length = 374
Score = 33.5 bits (73), Expect = 5.8
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +1
Query: 262 KKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDR 441
+ GF VK Y TGE ++PGA P FG E +L K+ L H
Sbjct: 157 RPGFVVKDYDTGECWRVPGACPGYPENSTFGC--GESVAELQATRKSQIDPRRLFHNQQE 214
Query: 442 NRRIKPCPEKFQVCN-ERFDVIITCEERVY 528
K C + Q+ N + D++I R Y
Sbjct: 215 CIARKSCELRCQMDNCQWMDLVIPAFTRPY 244
>UniRef50_Q6W1J7 Cluster: Transcriptional regulatory protein; n=1;
Rhizobium sp. NGR234|Rep: Transcriptional regulatory
protein - Rhizobium sp. (strain NGR234)
Length = 366
Score = 33.5 bits (73), Expect = 5.8
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = +1
Query: 178 NLKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGV 357
N K+S+ +VA +CS N+ + A +K+G +Y G+K L AS DR Y G+
Sbjct: 175 NNKLSNEWVASICSDNVEGGRQIAALFLKRGARRFAYIGGKKGNL--ASEDRFAGYLSGL 232
Query: 358 LYDEI 372
+ + I
Sbjct: 233 MQNGI 237
>UniRef50_UPI0000499114 Cluster: hypothetical protein 28.t00032;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 28.t00032 - Entamoeba histolytica HM-1:IMSS
Length = 310
Score = 33.1 bits (72), Expect = 7.7
Identities = 22/107 (20%), Positives = 50/107 (46%)
Frame = +1
Query: 256 LVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGLLHML 435
L+ + F+ ++ K K +R N E ++ D + N++ E +NY G+ +
Sbjct: 186 LLSREFDYQTIINKLKTKKDVPQTERIN--ENDIIVDHLRNEIKEIKENYQQLEGIFNK- 242
Query: 436 DRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQ 576
+ +++K + V E DV+ + ++ DQ+++ S + I +
Sbjct: 243 -KTKQVKKLKSEKAVLQESIDVLESENRQLKDQIVQLQSSLKKIQEE 288
>UniRef50_A0Q5G6 Cluster: Putative uncharacterized protein; n=7;
Gammaproteobacteria|Rep: Putative uncharacterized
protein - Francisella tularensis subsp. novicida (strain
U112)
Length = 172
Score = 33.1 bits (72), Expect = 7.7
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +1
Query: 304 VKLPGASADRPN-CYEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQV 480
V L G A + N +EF + + EK K +N L D + C E +
Sbjct: 86 VNLGGYDASKLNELHEFALFVAADKTEAKEKAKQSLLKNSLYQHKDNLMEVDDCLELSSI 145
Query: 481 CNERFDVIITCEERVYDQVIEWFGSR 558
+ +I++ ++VYD +WFG R
Sbjct: 146 DGKYIHLILS--DKVYDLKPDWFGYR 169
>UniRef50_Q23B16 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 530
Score = 33.1 bits (72), Expect = 7.7
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = +1
Query: 475 QVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQ 576
+V E++D+I+ ++VY +W+G++ ++YN+
Sbjct: 119 EVAEEQYDLIVHMGDQVYLDSDQWYGNKNNVYNR 152
>UniRef50_Q6C425 Cluster: Similar to DEHA0F21252g Debaryomyces
hansenii IPF 6452.1; n=1; Yarrowia lipolytica|Rep:
Similar to DEHA0F21252g Debaryomyces hansenii IPF 6452.1
- Yarrowia lipolytica (Candida lipolytica)
Length = 1318
Score = 33.1 bits (72), Expect = 7.7
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 514 EERVYDQVIEWFGSRRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDND 693
++R D +IE G+ + N + I QD+ E+ + AFL++ V Q +D D+D
Sbjct: 824 QKRAADSMIEPSGAAKRFRNSNQNNNAITAQDDGEDPILAAFLLAKQVISQTQQED-DDD 882
Query: 694 I 696
+
Sbjct: 883 V 883
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 670,941,246
Number of Sequences: 1657284
Number of extensions: 12387288
Number of successful extensions: 28227
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 27202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28198
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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