Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_D02
(759 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2027| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 9e-27
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_24697| Best HMM Match : Filament (HMM E-Value=0.11) 29 4.1
SB_22009| Best HMM Match : Vicilin_N (HMM E-Value=0.6) 29 5.4
SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_46055| Best HMM Match : Prothymosin (HMM E-Value=9.4) 28 7.2
SB_24631| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_2755| Best HMM Match : Vicilin_N (HMM E-Value=7.1) 28 7.2
SB_47064| Best HMM Match : Vicilin_N (HMM E-Value=2.4) 28 9.5
SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 9.5
SB_44346| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_2027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 117 bits (282), Expect = 9e-27
Identities = 58/110 (52%), Positives = 77/110 (70%)
Frame = +1
Query: 430 MLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQD 609
MLDRNRRIK PE+FQ E FD+IIT EERVYDQVIE + +PVHVVNIDI D
Sbjct: 1 MLDRNRRIKALPERFQEAVEHFDLIITAEERVYDQVIEHLEGLDAQSYKPVHVVNIDILD 60
Query: 610 NHEEATIGAFLISDMVTKMAQSDDLDNDIXELLHEFESXCHRPILNCIMF 759
NHEEAT+GAFLI ++ + + D++++I +++ +FE R IL+ + F
Sbjct: 61 NHEEATLGAFLICEICEAIEKLTDVEDEINDVVAKFEDKYKRNILHSVAF 110
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +1
Query: 247 HAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNG 420
HAF NVK+ G K + S RP C+ G IY ++E KN NG
Sbjct: 421 HAFTSTSTRNVKTPGLKTKTDISSQSFSRPVCFATGDCSAMIYYQVIEWMKNPQDVNG 478
>SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 935
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +1
Query: 394 DKNYYTQNGLLHMLDRNRRI--KPCPEKF 474
DKN+Y ++GLL L +R+I K C EKF
Sbjct: 656 DKNFYCEDGLLMTLANHRQIAQKDCSEKF 684
>SB_24697| Best HMM Match : Filament (HMM E-Value=0.11)
Length = 266
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 589 VNIDIQDN-HEEATIGAFLISDMVTKMAQSDDLDNDIXELLHEFE 720
+++D +DN H EA A + ++ +K+AQS+ ND+ +H +
Sbjct: 150 MSMDEKDNAHNEAKNTAKRVFELESKLAQSEQARNDLQAQVHSLQ 194
>SB_22009| Best HMM Match : Vicilin_N (HMM E-Value=0.6)
Length = 208
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 589 VNIDIQDNHEEATIGA 636
VNID QDN+EEA +GA
Sbjct: 175 VNIDEQDNNEEAPVGA 190
>SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 706 VIHXYHCPNHRFEPFLLP 653
++H YH P H++ PFL P
Sbjct: 387 LLHFYHIPCHKWVPFLAP 404
>SB_46055| Best HMM Match : Prothymosin (HMM E-Value=9.4)
Length = 221
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 511 CEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQDNHEEATIGA 636
CE+ + + S+R N+ V NID QDN+E+A +GA
Sbjct: 103 CEKGKSHHINKMSRSKRPRQNRQQDV-NIDEQDNNEDAPVGA 143
>SB_24631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 511 CEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQDNHEEATIGA 636
CE+ + + S+R N+ V NID QDN+E+A +GA
Sbjct: 103 CEKGKSHHINKMSRSKRPRQNRQQDV-NIDEQDNNEDAPVGA 143
>SB_2755| Best HMM Match : Vicilin_N (HMM E-Value=7.1)
Length = 166
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 511 CEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQDNHEEATIGA 636
CE+ + + S+R N+ V NID QDN+E+A +GA
Sbjct: 103 CEKGKSHHINKMSRSKRPRQNRQQDV-NIDEQDNNEDAPVGA 143
>SB_47064| Best HMM Match : Vicilin_N (HMM E-Value=2.4)
Length = 175
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 589 VNIDIQDNHEEATIGA 636
VNID QDN+E+A +GA
Sbjct: 136 VNIDEQDNNEDAAVGA 151
>SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 416
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 148 LCTKCSVA*SNLKMSDLYVAVVCSSNMNRSMEAHA 252
L T +V NL +SDL +A+VC + S+ AH+
Sbjct: 54 LKTTTNVFILNLAISDLLIAIVCMPSSMHSIVAHS 88
>SB_44346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 29
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 589 VNIDIQDNHEEATIGA 636
VNID QD HE+A +GA
Sbjct: 11 VNIDKQDKHEDAPVGA 26
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,917,266
Number of Sequences: 59808
Number of extensions: 404255
Number of successful extensions: 886
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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