Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_D01
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 30 0.27
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 29 0.62
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 27 1.9
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 3.3
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 27 3.3
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 26 4.4
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 26 4.4
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 4.4
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 26 4.4
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 26 5.8
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 25 7.6
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 25 7.6
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 25 7.6
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 25 7.6
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 292 LKIIEILKETEADTKNLFGRYGSQRMKDWQDVERNYEKE 408
L ++EI ++ + D L + +Q+M DW D E+ YE++
Sbjct: 689 LSLLEIYRDLDEDDVQLSIGHIAQQMLDWTDNEKLYERK 727
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.1 bits (62), Expect = 0.62
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +1
Query: 97 ESNIPIDINIGKLQDWLISRRHVSKDWQKNVIAVREKINNAIQDMP---AHQDIAALLSG 267
E+NI I NI +Q+W+ + +++QK + +N + +P IAA++
Sbjct: 88 ENNIDIPKNIDAMQNWIFPQTQQYRNYQKE-FCEQALFHNLLLALPTGLGKTFIAAVVML 146
Query: 268 SYINYFHCLKII 303
+Y +F KII
Sbjct: 147 NYFRWFPESKII 158
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 225 LDGIVDLLSHSYDILLPIFRDVPTTDQPVLKLSYV-YIDGDVAFI 94
+DG++ L H D+ + +D+P D+ ++S V + G V F+
Sbjct: 630 IDGVITLGIHVADVAYYVKQDMPLDDEAANRVSEVQLLQGSVPFL 674
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 244 DIAALLSGSYINYFH-CLKIIEILKETEADTKNLFGRYGSQRMKDWQDV 387
D +L I F CL++IEI KET+A+ +F Q + W D+
Sbjct: 187 DSMRMLQARGIKLFRSCLELIEIYKETKAEHVRVF---LEQILPPWMDM 232
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 663 WSYISGSSCSFAXNSLLIFSXWIPSCLHKARNSDLLD 553
W Y SG N L + W +C+ K +SDL++
Sbjct: 310 WFYYSGGYELLQRNPKLYETLWRCACIKKPSDSDLIE 346
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 666 IWSYISGSSCSFAXNSLLIFSXWIPSCLH 580
IW+YIS + LL S WI +CLH
Sbjct: 95 IWNYISVAEMG---GVLLFLSYWIWTCLH 120
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 666 IWSYISGSSCSFAXNSLLIFSXWIPSCLH 580
IW+YIS + LL S WI +CLH
Sbjct: 95 IWNYISVAEMG---GVLLFLSYWIWTCLH 120
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 666 IWSYISGSSCSFAXNSLLIFSXWIPSCLH 580
IW+YIS + LL S WI +CLH
Sbjct: 67 IWNYISVAEMG---GVLLFLSYWIWTCLH 92
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 666 IWSYISGSSCSFAXNSLLIFSXWIPSCLH 580
IW+YIS + LL S WI +CLH
Sbjct: 95 IWNYISVAEMG---GVLLFLSYWIWTCLH 120
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 468 WNLITNIPDQHLCCLC 421
WN + N+ D H C LC
Sbjct: 61 WNYLCNLQDLHECVLC 76
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 7.6
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +2
Query: 452 LVMRFQGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXA 631
LV++ K E+ D + K +N +S EFL L Q + EKI+ E+
Sbjct: 65 LVLQLINRPSASGKNEETTTDSDGKD----QNNSSEWGEFLHLPGQKFFEFEKIREEIVR 120
Query: 632 KLQE 643
+ +E
Sbjct: 121 ETEE 124
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 482 QIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQL 592
QI+++ + F K+ +K+E S E LCKQL
Sbjct: 15 QISQQPETDLVFTKRSECKVKDELFSDKENSILCKQL 51
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -2
Query: 192 YDILLPIFRDVPTTDQPV---LKLSYVYIDGDVAFIHVS*IE*GLK 64
YD LLPI D V +K++ +++ VA IH+ + GLK
Sbjct: 159 YDYLLPIIADGDMGFGSVTSTMKMTKRFVESGVAMIHLDDLAIGLK 204
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.4 bits (53), Expect = 7.6
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 184 NVIAVRE--KINNAIQDMPAHQDIAALLSGSYINYFHCLKIIEILKETEADTKNLFGRYG 357
N +++ E K+ A++ + D L S +++ F + +IE L+E D KN+ +
Sbjct: 284 NALSLSESGKLLTALEKVGQANDHTCLASIDFMHNF-VIAVIEPLQELSKDAKNMRHIFI 342
Query: 358 SQRMKDWQDV 387
++MK Q V
Sbjct: 343 FRKMKFIQQV 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,774
Number of Sequences: 5004
Number of extensions: 45754
Number of successful extensions: 182
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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