Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_D01
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0147 + 12277012-12277207,12277401-12277495,12277608-122779... 97 1e-20
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 33 0.28
10_08_0133 + 15100049-15101836,15103344-15103382 30 2.0
08_02_0295 - 15449323-15449376,15449625-15449804,15450558-154506... 29 2.6
07_03_0016 - 12474773-12475249 29 3.4
10_01_0343 - 3773274-3773390,3773476-3773637,3773758-3773853,377... 28 6.0
06_02_0278 - 13697682-13697984 28 6.0
04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012 28 6.0
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766... 28 7.9
10_04_0015 + 7586705-7587218,7587294-7588063,7588243-7588278,758... 28 7.9
05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152 28 7.9
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 28 7.9
04_03_0009 + 9313227-9313533,9314182-9314405,9315336-9315542 28 7.9
01_05_0261 - 20135258-20135725 28 7.9
>06_02_0147 +
12277012-12277207,12277401-12277495,12277608-12277949,
12278074-12278223,12278311-12278832,12279082-12279290,
12279412-12279544,12279814-12279954
Length = 595
Score = 97.1 bits (231), Expect = 1e-20
Identities = 43/122 (35%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Frame = +1
Query: 103 NIPIDINIGKLQDWLISRRHVSKDWQKNVIAVREKINNAIQDMPAHQDIAAL-LSGSYIN 279
++PIDI G+LQ+WL+ R+ V +DW+K + +R ++ A +P D + L L I
Sbjct: 9 SLPIDIAFGRLQEWLVDRKRVPQDWRKRLAGIRARLAAAFASLPRDLDPSLLALEPDEIG 68
Query: 280 YFHCLKIIEILKETEADTKNLFGRYGSQRMKDWQDVERNYEKENLYLAEAAQMLVRNISY 459
Y KI IL E+ +++N+FGR + +W+ + + YEK++++L EAAQ++V+N++Y
Sbjct: 69 YLEAKKIYGILLESNPESRNIFGRL-TGSAGEWEAIVKAYEKDHVFLGEAAQIMVQNVNY 127
Query: 460 EI 465
++
Sbjct: 128 DM 129
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/64 (26%), Positives = 37/64 (57%)
Frame = +2
Query: 476 KRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXAKLQELPEI 655
++Q+ K +Q A+ +++ AD + A S + + C++LG+Q +++EL + LP
Sbjct: 170 RKQMQKTQQQLAELDRREADIKRLAALSATRYAEACQELGLQGINVRQELIESAKTLPST 229
Query: 656 YDQI 667
+ +I
Sbjct: 230 FTKI 233
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 521 KKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXAKLQELPEIYDQIGKSL 679
K+H DYLK E K + L KQ + E +++ ++ ++YD + K +
Sbjct: 692 KEHGDYLKTEIEDKQKRLQAVKQSLLSIEAKDQDINNRINRAFKVYDLLEKRI 744
>10_08_0133 + 15100049-15101836,15103344-15103382
Length = 608
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 263 ESKAAMSW*AGMSWMALLIFSL--TAMTFFCQSLETCLRLINQS 138
E + + + +W+A+L + L TA +FC SLE RL+ S
Sbjct: 112 EERRVLGYAVMAAWLAVLFYLLGDTAAVYFCSSLEGLSRLLRLS 155
>08_02_0295 -
15449323-15449376,15449625-15449804,15450558-15450604,
15450695-15450875,15451348-15451452,15452414-15452473,
15452957-15453041,15453337-15453353
Length = 242
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -2
Query: 231 HVLDGIVDLLSHSYDILLPIFRDVPTTDQPVLKL 130
HV+ ++DLL +Y+ +LPI+ TTD+ K+
Sbjct: 113 HVVKYLLDLLGLNYEDVLPIYIGDDTTDENAFKV 146
>07_03_0016 - 12474773-12475249
Length = 158
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 112 IDINIGKLQDWLISRRHVSKDWQKNVIAVREKINNAIQDMPAHQDIAA 255
+D+ G++Q L +++WQ+N A INN +Q H D+ A
Sbjct: 100 LDVQTGEIQYNLTEHIAQTQEWQQNADAQFANINNMMQQQ--HDDLQA 145
>10_01_0343 -
3773274-3773390,3773476-3773637,3773758-3773853,
3773956-3774009
Length = 142
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 190 IAVREKINNAIQDMPAHQDIAALLSGSYINYFHCLKIIEILKETEADTKNLFG 348
+ + + IN+ P H+ I + G F C I ++L+E T + +G
Sbjct: 1 MGITDFINSKASGKPVHEVIMEMTDGGVDYSFECTGITDVLREAFVSTHDGWG 53
>06_02_0278 - 13697682-13697984
Length = 100
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +1
Query: 94 DESNIPIDINIGKLQDWLISRRHVSKDWQKNVIAVREKINNAIQDMPAHQDIAA 255
D P DI G++Q L +++WQ+ A INN +Q H D+ A
Sbjct: 36 DRWRAPHDIQTGEIQYNLEEHISQTQEWQQTADAQFANINNMMQQQ--HDDLQA 87
>04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012
Length = 401
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -3
Query: 413 KFSFS*FLSTSCQSFIL--CDPYL-PNKFLVSASVSFSISMIFKQW 285
+F+F+ S S +S ++ CD L P+K +V+A S+ +I K W
Sbjct: 180 RFAFNEITSHSLKSLVIDSCDSKLCPSKLVVTAPAIASLCLIVKLW 225
>12_02_0381 +
18376045-18376114,18376270-18376420,18376524-18376681,
18378680-18378945,18379025-18379243,18379309-18379417,
18379488-18379603,18379935-18380033,18381447-18381556,
18382928-18383006,18383127-18383273,18383363-18383443,
18383529-18383648,18383902-18384024,18384276-18384353,
18384459-18384547,18384653-18384761,18385018-18385086,
18385200-18385310,18385657-18385712,18385808-18385985,
18386065-18386166,18386243-18386314,18386489-18386554,
18386674-18386739,18386853-18386936,18387080-18387196,
18388077-18388163,18389321-18389341
Length = 1050
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +1
Query: 202 EKINNAIQDMPAHQDIAALLSGSYINYFHCLKI------IEILKETEADTKNLFGRYGSQ 363
EK+ + +++ I L G +INY C+ + E + + D K Y S
Sbjct: 281 EKLEDKMKETVVEGTIEQLFEGHHINYIECINVDYKSNRKESFYDLQLDVKGCSDVYAS- 339
Query: 364 RMKDWQDVERNYEKENLYLAE 426
+ +VER E +N Y AE
Sbjct: 340 -FDKYVEVER-LEGDNKYHAE 358
>10_04_0015 +
7586705-7587218,7587294-7588063,7588243-7588278,
7588591-7588662
Length = 463
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 112 IDINIGKLQDWLISRRHVSKDWQKNVIAVREKINNAIQDMPAHQDIAA 255
+D+ +G++Q L +++WQ++ A INN +Q H D+ A
Sbjct: 355 LDVQMGEIQYNLTEHIAQTQEWQQSADAQFANINNMMQQQ--HDDLQA 400
>05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152
Length = 265
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 112 IDINIGKLQDWLISRRHVSKDWQKNVIAVREKINNAIQDMPAHQDIAA 255
+D+ G++Q L +++WQ++ A INN +Q H D+ A
Sbjct: 207 LDVQTGEIQHDLAKHIAQTQEWQQSANAQFTNINNIMQQQ--HDDLQA 252
>04_04_1192 +
31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 543 RMKHQVNQSFWLCVNNLVSXVRRSRENXWRNCR 641
R+K + W+CV+++ VR +RE CR
Sbjct: 285 RIKDHFDLQMWVCVSSIFDEVRLTREMLEHACR 317
>04_03_0009 + 9313227-9313533,9314182-9314405,9315336-9315542
Length = 245
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 112 IDINIGKLQDWLISRRHVSKDWQKNVIAVREKINNAIQDMPAHQDIAA 255
+D+ G++Q L +++WQ+ A INN IQ H D+ A
Sbjct: 187 LDVQTGEIQYNLTEHIAQTQEWQQTADAQFANINNMIQQQ--HDDLQA 232
>01_05_0261 - 20135258-20135725
Length = 155
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 112 IDINIGKLQDWLISRRHVSKDWQKNVIAVREKINNAIQDMPAHQDIAA 255
+D+ G++Q L +++WQ++ A INN +Q H D+ A
Sbjct: 97 LDVQTGEIQYNLTKHMAQTQEWQRSTDAHFANINNMMQQQ--HDDLQA 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,780
Number of Sequences: 37544
Number of extensions: 272977
Number of successful extensions: 817
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -