Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_D01
(679 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110477-11|CAB54323.1| 489|Caenorhabditis elegans Hypothetical... 176 1e-44
U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone... 31 0.76
U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone... 31 0.76
AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear recep... 31 0.76
AF016669-2|AAB66099.2| 455|Caenorhabditis elegans Hypothetical ... 31 0.76
AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical ... 31 1.00
AF077546-4|AAC26317.2| 704|Caenorhabditis elegans Hypothetical ... 30 1.3
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 30 1.7
U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone... 29 2.3
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 29 4.0
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 29 4.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 4.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 4.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 4.0
AC024772-2|AAF60537.2| 756|Caenorhabditis elegans Osm-9 and cap... 28 5.3
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF077546-5|AAC26316.1| 313|Caenorhabditis elegans Hypothetical ... 28 7.0
AC084152-9|AAK39313.1| 296|Caenorhabditis elegans Hypothetical ... 27 9.3
>AL110477-11|CAB54323.1| 489|Caenorhabditis elegans Hypothetical
protein Y113G7B.16 protein.
Length = 489
Score = 176 bits (428), Expect = 1e-44
Identities = 78/122 (63%), Positives = 97/122 (79%)
Frame = +1
Query: 103 NIPIDINIGKLQDWLISRRHVSKDWQKNVIAVREKINNAIQDMPAHQDIAALLSGSYINY 282
++PIDI+ KL DWL+SRRH +KDWQK+V+A+REKI +AI DMP I LL G+YINY
Sbjct: 4 DLPIDIHSSKLLDWLVSRRHCNKDWQKSVVAIREKIKHAILDMPESPKIVELLQGAYINY 63
Query: 283 FHCLKIIEILKETEADTKNLFGRYGSQRMKDWQDVERNYEKENLYLAEAAQMLVRNISYE 462
FHC +IIEIL++TE DTKN G Y SQRMKDWQ++E Y+K+N+YLAEAAQ+L R YE
Sbjct: 64 FHCCQIIEILRDTEKDTKNFLGFYSSQRMKDWQEIEGMYKKDNVYLAEAAQILQRLAQYE 123
Query: 463 IP 468
IP
Sbjct: 124 IP 125
>U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform c protein.
Length = 455
Score = 31.1 bits (67), Expect = 0.76
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = +1
Query: 43 FVCFVSKFKALFNLTNMDESNI-PIDINIGKLQDWLISRRHVSKDWQKNV-IAVREKINN 216
F C + + T+ +E I P + ++ KL++W + + +W K + I R +N+
Sbjct: 214 FSCLLDDITYMAENTHENEGTIEPFECSVEKLREWFVRDLSLMLEWGKCLPIMERLLLND 273
Query: 217 AIQDMPAHQDIAALLSGSYI--NYFHCLKIIEI 309
+ M A I L+ ++ N F C +I++
Sbjct: 274 KLALMKAFAPIFPLIQLAFYTRNEFECDIVIKL 306
>U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform a protein.
Length = 439
Score = 31.1 bits (67), Expect = 0.76
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = +1
Query: 43 FVCFVSKFKALFNLTNMDESNI-PIDINIGKLQDWLISRRHVSKDWQKNV-IAVREKINN 216
F C + + T+ +E I P + ++ KL++W + + +W K + I R +N+
Sbjct: 198 FSCLLDDITYMAENTHENEGTIEPFECSVEKLREWFVRDLSLMLEWGKCLPIMERLLLND 257
Query: 217 AIQDMPAHQDIAALLSGSYI--NYFHCLKIIEI 309
+ M A I L+ ++ N F C +I++
Sbjct: 258 KLALMKAFAPIFPLIQLAFYTRNEFECDIVIKL 290
>AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear receptor
NHR-40 protein.
Length = 439
Score = 31.1 bits (67), Expect = 0.76
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = +1
Query: 43 FVCFVSKFKALFNLTNMDESNI-PIDINIGKLQDWLISRRHVSKDWQKNV-IAVREKINN 216
F C + + T+ +E I P + ++ KL++W + + +W K + I R +N+
Sbjct: 198 FSCLLDDITYMAENTHENEGTIEPFECSVEKLREWFVRDLSLMLEWGKCLPIMERLLLND 257
Query: 217 AIQDMPAHQDIAALLSGSYI--NYFHCLKIIEI 309
+ M A I L+ ++ N F C +I++
Sbjct: 258 KLALMKAFAPIFPLIQLAFYTRNEFECDIVIKL 290
>AF016669-2|AAB66099.2| 455|Caenorhabditis elegans Hypothetical
protein K10G6.4 protein.
Length = 455
Score = 31.1 bits (67), Expect = 0.76
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 491 KEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXAKLQELPEIYDQIG 670
K+ Q Q DF ++ AD + + SEF LC+Q ++ E + +L K L E ++
Sbjct: 278 KQRQEQLDFARQLADSEETFSVRISEFEKLCEQKDLKIEDLHSQL-EKCDRLQESLEKAD 336
Query: 671 KS 676
+S
Sbjct: 337 RS 338
>AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical
protein Y40C7B.1 protein.
Length = 916
Score = 30.7 bits (66), Expect = 1.00
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 452 LVMRFQGLKRQIA-KEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRE 622
++ R + +K+Q +E+Q DFEK++ + LK E K + KQ+ EK K E
Sbjct: 218 ILRREEEIKQQNQEREKQINEDFEKRNQEKLKREEEIKQQNQEREKQINDDFEKRKLE 275
>AF077546-4|AAC26317.2| 704|Caenorhabditis elegans Hypothetical
protein T08E11.4 protein.
Length = 704
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 310 LKETEADTKNLFGRYGSQRMKDWQDVERNYEKENLYLAEAAQMLVRNISYE 462
L T + T N YG ++ W D+ER Y + + EA +++ +E
Sbjct: 622 LSFTASSTLNEPASYGYDKLIRWDDMERKYAVNDSIIIEARVKIIKMTGFE 672
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 584 KQLGIQXEKIKRELXAKLQELPEIYDQIGK 673
++ G Q E +KRE A QEL +I DQ+G+
Sbjct: 1499 EESGEQTEAVKRENKALAQELKDIADQLGE 1528
>U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform b protein.
Length = 434
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = +1
Query: 49 CFVSKFKALFNLTNMDESNI-PIDINIGKLQDWLISRRHVSKDWQKNV-IAVREKINNAI 222
C + + T+ +E I P + ++ KL++W + + +W K + I R +N+ +
Sbjct: 195 CLLDDITYMAENTHENEGTIEPFECSVEKLREWFVRDLSLMLEWGKCLPIMERLLLNDKL 254
Query: 223 QDMPAHQDIAALLSGSYI--NYFHCLKIIEI 309
M A I L+ ++ N F C +I++
Sbjct: 255 ALMKAFAPIFPLIQLAFYTRNEFECDIVIKL 285
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +2
Query: 467 QGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXAKLQEL 646
+GL+ Q+ EQAQ + EKK +Y+ + K EF + + + EK + L K E
Sbjct: 868 KGLREQL---EQAQHELEKKKREYMW-KLQQKDEFYEIMDRNVKETEKENKRLLRKRTED 923
Query: 647 PEIYD 661
E D
Sbjct: 924 KERMD 928
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +2
Query: 467 QGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXAKLQEL 646
+GL+ Q+ EQAQ + EKK +Y+ + K EF + + + EK + L K E
Sbjct: 868 KGLREQL---EQAQHELEKKKREYMW-KLQQKDEFYEIMDRNVKETEKENKRLLRKRTED 923
Query: 647 PEIYD 661
E D
Sbjct: 924 KERMD 928
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 494 EEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXAKLQE 643
+++A A +K+ D LK E K + A K + +K+K+E AKL++
Sbjct: 7610 KQEANAKLQKEKDDKLKQEKDDKLKQEADAKLKKEKDDKLKQEADAKLKK 7659
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 494 EEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXAKLQE 643
+++A A +K+ D LK E + K + A K + +K+K+E AKL++
Sbjct: 7730 KQEADAKLKKEKDDKLKQEKNDKLKQEADAKLKKEKDDKLKQEADAKLKK 7779
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 494 EEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXAKLQE 643
+++A A +K+ D LK E K + A K + +K+K+E AKL++
Sbjct: 8042 KQEANAKLQKEKDDKLKQEKDDKLKQEADAKLKKEKDDKLKQEADAKLKK 8091
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 494 EEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXAKLQE 643
+++A A +K+ D LK E K + A K + +K+K+E AKL++
Sbjct: 7630 KQEANAKLQKEKDDKLKQEKDDKLKQEADAKLKKEKDDKLKQEADAKLKK 7679
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 494 EEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXAKLQE 643
+++A A +K+ D LK E + K + A K + +K+K+E AKL++
Sbjct: 7750 KQEADAKLKKEKDDKLKQEKNDKLKQEADAKLKKEKDDKLKQEADAKLKK 7799
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 494 EEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXAKLQE 643
+++A A +K+ D LK E K + A K + +K+K+E AKL++
Sbjct: 8062 KQEANAKLQKEKDDKLKQEKDDKLKQEADAKLKKEKDDKLKQEADAKLKK 8111
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 494 EEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXAKLQE 643
+++A A +K+ D LK E K + A K + +K+K+E AKL++
Sbjct: 7630 KQEANAKLQKEKDDKLKQEKDDKLKQEADAKLKKEKDDKLKQEADAKLKK 7679
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 494 EEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXAKLQE 643
+++A A +K+ D LK E + K + A K + +K+K+E AKL++
Sbjct: 7750 KQEADAKLKKEKDDKLKQEKNDKLKQEADAKLKKEKDDKLKQEADAKLKK 7799
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 494 EEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQXEKIKRELXAKLQE 643
+++A A +K+ D LK E K + A K + +K+K+E AKL++
Sbjct: 8062 KQEANAKLQKEKDDKLKQEKDDKLKQEADAKLKKEKDDKLKQEADAKLKK 8111
>AC024772-2|AAF60537.2| 756|Caenorhabditis elegans Osm-9 and
capsaicin receptor-relatedprotein 4 protein.
Length = 756
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -3
Query: 227 SWMALLIFSLTAMTFFCQSLETCLRLINQS*SFPMF-ISMGMLLSSMLVKL 78
S++ + I SLT T F + LE C + +F ++ + + +LL +ML+ +
Sbjct: 588 SYVRMFIMSLTEFTVFFEQLEECEHTVIGKITFVVYMLLVTLLLINMLIAM 638
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical
protein F21C10.7 protein.
Length = 2541
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +2
Query: 440 WSGILVMRFQGLKRQIAKEEQAQADFE--KKHADYLKNEASSKSEFLALCKQLGIQXEKI 613
W +V + + + + + Q FE ++ + LK E KSE L CK L E
Sbjct: 700 WQEEMVEIIRNMNQVVTTQSNNQEQFEQVRRKIEDLKVEVDKKSEHLEACKTLS-HNETF 758
Query: 614 KRELXAKLQELPEI 655
+ +L ++ +I
Sbjct: 759 QTQLHKTIENQEQI 772
>AF077546-5|AAC26316.1| 313|Caenorhabditis elegans Hypothetical
protein T08E11.3 protein.
Length = 313
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 310 LKETEADTKNLFGRYGSQRMKDWQDVERNYEKENLYLAEAAQMLVRNI 453
LK+ DT F +G + W+D+E +Y ++ + EA ++ ++
Sbjct: 83 LKKNSKDTFEKFTGHGWSKCISWKDLESDYLVDDSIVVEAHVKIINSL 130
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 310 LKETEADTKNLFGRYGSQRMKDWQDVERNYEKENLYLAEAAQMLVRNISYE 462
L T + T N YG + W D+ER Y + + EA +++ +E
Sbjct: 218 LSFTASRTFNEPASYGYDKFIRWDDMERKYAINDSIIIEARVKIIKMTGFE 268
>AC084152-9|AAK39313.1| 296|Caenorhabditis elegans Hypothetical
protein Y102A11A.1 protein.
Length = 296
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 186 ILLPIFRDVPTTDQPVLKLSYVYIDGDVA 100
+LLP+FR + K S VYIDGD A
Sbjct: 144 LLLPVFRTTWRNIKVTRKSSSVYIDGDNA 172
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,496,009
Number of Sequences: 27780
Number of extensions: 248079
Number of successful extensions: 966
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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