Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C23
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              27   0.15 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   7.5  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 481 PVCHSCSEVGHKASSCPK 534
           P+C +C ++ H    CPK
Sbjct: 76  PICGACGDIAHTVKYCPK 93



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 682 CFKCGAKGHYANKCPKG 732
           C  CG   H    CPKG
Sbjct: 78  CGACGDIAHTVKYCPKG 94


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 460  PKDAKRLPVCHSCSEVGHKASSCPKIPPDQREAAQKQEEARYRS 591
            P D K    C S   V H +    +  P Q++  Q+Q++ + +S
Sbjct: 1480 PTDKKS--ACDSKLIVDHSSQKTQQQQPQQQQQQQQQQQPQQQS 1521


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 114 SHRNMGRYRYHSQEWTNLQQRY--VNFILSLAAVVTEP 221
           ++ N   Y Y++  + N ++ Y  +N+I  +   V  P
Sbjct: 97  NNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPVP 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,243
Number of Sequences: 438
Number of extensions: 5093
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)