Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_C20
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800 33 0.17
02_02_0310 - 8842286-8843314 31 1.2
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685... 30 1.6
03_04_0035 - 16685674-16686376,16686594-16686640 29 4.8
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 29 4.8
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 28 6.4
02_04_0260 - 21350060-21350269,21350544-21350604,21350834-213509... 28 6.4
01_06_0288 - 28228673-28228744,28228866-28229071,28229316-282295... 28 6.4
09_04_0619 - 19001350-19001359,19001737-19001800,19001955-190020... 28 8.4
06_03_1269 + 28865236-28865819,28866124-28866754 28 8.4
>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
Length = 863
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 603 PESCCVKKSILSTFAGNNCTVDAA 674
P SCCV+K I+S F NCT D A
Sbjct: 53 PASCCVRKIIVSNFLPLNCTKDEA 76
>02_02_0310 - 8842286-8843314
Length = 342
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 413 HHLHNDDHQQKDCVRDDHAVTLAYRSTA-SQERDHEHYSPDDYEDPRTDSKM 261
HH H+D++++ + + D A R + + R H H+ DD+E + M
Sbjct: 194 HHHHHDENEEDEHEQADEASPAVERLISFHRRRHHHHHHEDDHEQREEGAPM 245
>10_06_0171 +
11466934-11466990,11467073-11468312,11468450-11468596,
11469650-11470140
Length = 644
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 449 DALAVGEEEDADHHLHNDDHQQKDCVRDDHAV 354
D + EE+D DHH H+ H D +HA+
Sbjct: 320 DTFRIAEEDDDDHHHHHHYHGDADDDDGEHAM 351
>03_04_0035 - 16685674-16686376,16686594-16686640
Length = 249
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 458 ALLDALAVGEEEDADHHLHNDDHQQK 381
ALL L E++D DHH H+ H +
Sbjct: 224 ALLGQLEAEEDDDGDHHHHHHHHHHQ 249
>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 449 DALAVGEEEDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDD 291
DA G E+A H H C RDD V + +S+ +D++ DD
Sbjct: 1209 DAKNCGSGEEAGDHDSERTHGTLPCSRDDEPVHVPSDFGSSKSQDNQRDEDDD 1261
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = -3
Query: 440 AVGEEEDADHHLH--NDDHQQKDC 375
++ EE +DHH H N++H+ +DC
Sbjct: 969 SISIEESSDHHEHHHNEEHKAEDC 992
>02_04_0260 -
21350060-21350269,21350544-21350604,21350834-21350901,
21351274-21351483,21351684-21351724,21351923-21351972,
21352084-21352172,21352265-21352339,21352539-21352656,
21352689-21352771,21352854-21352970,21353857-21354074,
21354184-21354241,21354356-21354508
Length = 516
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -1
Query: 334 QHPKNAITNITAPTTMKIHGPTARWVFSKSLTMVQFIRNATPIP 203
QH +N I MK H P +W+ L+ Q I++ P
Sbjct: 187 QHWENKIQASDENGMMKEHSPLGKWIIGMKLSGPQMIKHVQEFP 230
>01_06_0288 -
28228673-28228744,28228866-28229071,28229316-28229554,
28229649-28229705,28229787-28229873,28229963-28230507,
28231574-28231714
Length = 448
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +2
Query: 404 ASGDQRPPLHLRREH---QGEHYGWRRR 478
A+ + PL LRRE +GE GWRRR
Sbjct: 3 AAAREEQPLLLRREEGEEEGEEVGWRRR 30
>09_04_0619 -
19001350-19001359,19001737-19001800,19001955-19002099,
19002434-19002917,19003175-19003260,19003417-19003484,
19003565-19003709,19004561-19004677
Length = 372
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 665 DRAVVAGEGREDALLDATGLGQRELAVVDSASVT 564
D G G+E+ L+ATG+ E+ + D+ +T
Sbjct: 28 DHFTPVGAGQEELGLEATGIESNEIKIADTTEMT 61
>06_03_1269 + 28865236-28865819,28866124-28866754
Length = 404
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 293 RRGCNVRDRVLGMLWSDTRESLHGRHVRN 379
RR C+V D V +W ++HGR R+
Sbjct: 214 RRRCSVFDVVTAAIWQCRTRAIHGRRCRS 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,004,630
Number of Sequences: 37544
Number of extensions: 342386
Number of successful extensions: 1282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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