Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C19
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0090 - 5564326-5567280                                           31   1.1  
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280...    30   2.5  
04_01_0288 + 3824337-3826385                                           29   5.7  
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150...    28   7.5  
12_01_1088 + 11298966-11299086,11299104-11299189,11299298-112993...    28   9.9  
06_03_0328 + 19609096-19609657,19609862-19610169                       28   9.9  
04_03_0050 + 10161245-10161363,10161557-10161686,10161868-101624...    28   9.9  

>03_02_0090 - 5564326-5567280
          Length = 984

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
 Frame = +3

Query: 237  LNVINDDSQTLSRFDIAKSRLKKFKQWKTSNGQVKTLSDLPLIEGFTDKTAKKLCDSILN 416
            LN  +DD+ T S   + +   +     K     V +++ L  + GFT+ + ++LC   + 
Sbjct: 695  LNADDDDAATASEASLDELEARN-ASIKFLGINVSSVAALRKLSGFTNVSTRRLCLKDMA 753

Query: 417  GP---TEEVEQISNKIKGQILHPNLKESTIKDCKTVLTVYISVNS 542
            GP   T     +S+ + G  +   L+   I+ C  V  + I   S
Sbjct: 754  GPASLTLLPSTLSDTLGGLDMLERLQHLAIRSCTGVKDIVIDAGS 798


>06_03_1416 +
           30027066-30027663,30027739-30027848,30027927-30028003,
           30028080-30028173,30028314-30028437,30028537-30028591,
           30028666-30028747,30028832-30028909,30028995-30029135,
           30029416-30029645,30029724-30029867,30029934-30030047,
           30030139-30030994,30031149-30031312,30031398-30031445,
           30033435-30033500,30033845-30033922,30034324-30034366
          Length = 1033

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 731 GRSQSGSFSFHHINVSDR*PLRY-TPCNIKYICDLNLLSFGVINTIILP 588
           GRS +G +   H+ VSD   ++   PCN +  C      F  + T +LP
Sbjct: 671 GRSWNGHWDLDHVMVSDSLDVKIDLPCNYQAACKTEAHDFLRVATDVLP 719


>04_01_0288 + 3824337-3826385
          Length = 682

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 258 SQTLSRFDIAKSRLKKFKQWKTSNGQVKTLSDLPLIEGFTDKTAKKLCDSILNGP 422
           S  + ++++  S   K  +  TS+   KTL+DL  + GF D    + C S L  P
Sbjct: 381 SGRMGQYNMLHSCYHKITKATTSHHWFKTLNDLSTLVGFADWLDMQHCSSNLEIP 435


>01_05_0564 +
           23312419-23312987,23314652-23314751,23314832-23315055,
           23315212-23316041,23316161-23316275,23316786-23316905,
           23317410-23317450,23317546-23317595,23317684-23317719,
           23317836-23317856
          Length = 701

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = +3

Query: 315 WKTSNGQVKTLSDLPLIEGFTDKTAKKLCDSILNGPTEEVEQISNKIKGQILHPNLK 485
           +  S+GQ  T S +P  E   +K A    + I+N   EEV+Q  NK + QIL   L+
Sbjct: 639 YSRSSGQ--TSSSVPSRESIANKGASPPRNDIVN---EEVDQRQNKPRRQILRDELQ 690


>12_01_1088 +
           11298966-11299086,11299104-11299189,11299298-11299379,
           11300817-11301202
          Length = 224

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 351 DLPLIEGFTDKTAKKLCDSILNG----PTEEVEQISNKIKGQILHPNLKESTIKDCKTV 515
           ++PL++     T  +    ILN     PT+EV +++ +    ILH   ++     C T+
Sbjct: 159 NMPLLDAMQVPTCARYLKDILNNKRPLPTKEVVKLTEQCSNAILHKLPEKKKYSRCPTI 217


>06_03_0328 + 19609096-19609657,19609862-19610169
          Length = 289

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +3

Query: 321 TSNGQVKTLS-DLPLIEGFTDKTAKKLCDSILNG----PTEEVEQISNKIKGQILHPNLK 485
           T  G ++ +  ++PL++     T  +    ILN     PT EV +++ +   QILH   +
Sbjct: 184 TRRGVIQKIHINVPLLDAMQVPTYARYLKDILNNKRLLPTTEVVKLTEQCSNQILHKFPE 243

Query: 486 ESTIKDCKTV 515
           +     C T+
Sbjct: 244 KKKDPGCPTI 253


>04_03_0050 +
           10161245-10161363,10161557-10161686,10161868-10162456,
           10162661-10162995
          Length = 390

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +3

Query: 321 TSNGQVKTLS-DLPLIEGFTDKTAKKLCDSILNG----PTEEVEQISNKIKGQILHPNLK 485
           T+ G ++ +  ++PL++     T  +    ILN     PT EV +++++    ILH   K
Sbjct: 276 TTRGVIQKIHINVPLLDAMQVPTYARYLKDILNNKRPLPTTEVVKLTDQCSNVILHKLPK 335

Query: 486 ESTIKDCKTV 515
           +     C T+
Sbjct: 336 KKKDPGCPTI 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,676,942
Number of Sequences: 37544
Number of extensions: 282497
Number of successful extensions: 703
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)