Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C19
         (802 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC017166-1|AAH17166.1|  556|Homo sapiens glypican 4 protein.           34   0.69 
AY358507-1|AAQ88871.1|  556|Homo sapiens glypican 4 protein.           34   0.69 
AY052833-1|AAL11018.1|  556|Homo sapiens glypican-4 protein.           34   0.69 
AL109623-1|CAB86664.2|  556|Homo sapiens glypican 4 protein.           34   0.69 
AL034400-1|CAI42076.1|  556|Homo sapiens glypican 4 protein.           34   0.69 
AF064826-1|AAC31899.1|  556|Homo sapiens glypican 4 protein.           34   0.69 
AF030186-1|AAC69991.1|  556|Homo sapiens glypican-4 protein.           34   0.69 

>BC017166-1|AAH17166.1|  556|Homo sapiens glypican 4 protein.
          Length = 556

 Score = 33.9 bits (74), Expect = 0.69
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 174 GSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQW--KTSNGQVKTL 347
           GS CC Q +E KYS   K    +V+++    L    +  SR KKF ++  +      K+L
Sbjct: 63  GSTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQA--VFASRYKKFDEFFKELLENAEKSL 120

Query: 348 SDL 356
           +D+
Sbjct: 121 NDM 123


>AY358507-1|AAQ88871.1|  556|Homo sapiens glypican 4 protein.
          Length = 556

 Score = 33.9 bits (74), Expect = 0.69
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 174 GSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQW--KTSNGQVKTL 347
           GS CC Q +E KYS   K    +V+++    L    +  SR KKF ++  +      K+L
Sbjct: 63  GSTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQA--VFASRYKKFDEFFKELLENAEKSL 120

Query: 348 SDL 356
           +D+
Sbjct: 121 NDM 123


>AY052833-1|AAL11018.1|  556|Homo sapiens glypican-4 protein.
          Length = 556

 Score = 33.9 bits (74), Expect = 0.69
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 174 GSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQW--KTSNGQVKTL 347
           GS CC Q +E KYS   K    +V+++    L    +  SR KKF ++  +      K+L
Sbjct: 63  GSTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQA--VFASRYKKFDEFFKELLENAEKSL 120

Query: 348 SDL 356
           +D+
Sbjct: 121 NDM 123


>AL109623-1|CAB86664.2|  556|Homo sapiens glypican 4 protein.
          Length = 556

 Score = 33.9 bits (74), Expect = 0.69
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 174 GSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQW--KTSNGQVKTL 347
           GS CC Q +E KYS   K    +V+++    L    +  SR KKF ++  +      K+L
Sbjct: 63  GSTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQA--VFASRYKKFDEFFKELLENAEKSL 120

Query: 348 SDL 356
           +D+
Sbjct: 121 NDM 123


>AL034400-1|CAI42076.1|  556|Homo sapiens glypican 4 protein.
          Length = 556

 Score = 33.9 bits (74), Expect = 0.69
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 174 GSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQW--KTSNGQVKTL 347
           GS CC Q +E KYS   K    +V+++    L    +  SR KKF ++  +      K+L
Sbjct: 63  GSTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQA--VFASRYKKFDEFFKELLENAEKSL 120

Query: 348 SDL 356
           +D+
Sbjct: 121 NDM 123


>AF064826-1|AAC31899.1|  556|Homo sapiens glypican 4 protein.
          Length = 556

 Score = 33.9 bits (74), Expect = 0.69
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 174 GSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQW--KTSNGQVKTL 347
           GS CC Q +E KYS   K    +V+++    L    +  SR KKF ++  +      K+L
Sbjct: 63  GSTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQA--VFASRYKKFDEFFKELLENAEKSL 120

Query: 348 SDL 356
           +D+
Sbjct: 121 NDM 123


>AF030186-1|AAC69991.1|  556|Homo sapiens glypican-4 protein.
          Length = 556

 Score = 33.9 bits (74), Expect = 0.69
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 174 GSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQW--KTSNGQVKTL 347
           GS CC Q +E KYS   K    +V+++    L    +  SR KKF ++  +      K+L
Sbjct: 63  GSTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQA--VFASRYKKFDEFFKELLENAEKSL 120

Query: 348 SDL 356
           +D+
Sbjct: 121 NDM 123


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,113,800
Number of Sequences: 237096
Number of extensions: 1618331
Number of successful extensions: 6737
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6736
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)