Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C19
         (802 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071634-1|AAL49256.1|  372|Drosophila melanogaster RE67859p pro...    89   7e-18
AE014296-3708|AAF51853.1|  372|Drosophila melanogaster CG14450-P...    89   7e-18
AF492764-2|AAM11674.1|  849|Drosophila melanogaster pol protein ...    31   2.4  
AE014297-3957|AAF56597.1| 1304|Drosophila melanogaster CG6490-PA...    29   9.8  

>AY071634-1|AAL49256.1|  372|Drosophila melanogaster RE67859p
           protein.
          Length = 372

 Score = 89.0 bits (211), Expect = 7e-18
 Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 12/222 (5%)
 Frame = +3

Query: 171 SGSRCCYQ--NLESKYSESQKVKILNVINDDSQT-LSRFDIAKSRLKKFKQWKTSNGQVK 341
           SG   C Q   L   YS++ ++KIL  IN+ S   ++ +DI K+R  K + WK  +G ++
Sbjct: 25  SGQPECDQAIGLLPAYSDADRLKILKTINESSMNQIANYDITKARATKLQNWKNRHGPLQ 84

Query: 342 TLSDLPLIEGFTDKTAKKLCDSILNGPTEEVEQI-SNKIK----GQILHPNLKESTIKDC 506
            LSD+  +EGF  K   K   S+L  P+    Q+  N+ K       + P + E      
Sbjct: 85  ELSDILYVEGFGLKVTTKFFKSLLAPPSSGSAQVGENRPKTARVAPFITPAMDEGQRSRI 144

Query: 507 KTVLTVYISVNSVCWTLINKNDYE----VVEWQYYSIDYPEGKKIQITDIFDIAWRITQR 674
            + + V I V SV W  +     E    +  WQ++ ++    KK+ ++++      ++ +
Sbjct: 145 VSAVGVRIGVTSVSWARLKIGSNEAPCLLTHWQHHELN---DKKLHLSELSRRCLYVSHQ 201

Query: 675 LPVADIYVMKAEATTLRAAGXDPNNPKVLAVNLXKAQMVSMI 800
           +PVAD YVM  E+  +  A  +P +     VN+ KAQ+ +++
Sbjct: 202 IPVADCYVM--ESPQMAQASSNPGSIDQQNVNIQKAQVSAIM 241


>AE014296-3708|AAF51853.1|  372|Drosophila melanogaster CG14450-PA
           protein.
          Length = 372

 Score = 89.0 bits (211), Expect = 7e-18
 Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 12/222 (5%)
 Frame = +3

Query: 171 SGSRCCYQ--NLESKYSESQKVKILNVINDDSQT-LSRFDIAKSRLKKFKQWKTSNGQVK 341
           SG   C Q   L   YS++ ++KIL  IN+ S   ++ +DI K+R  K + WK  +G ++
Sbjct: 25  SGQPECDQAIGLLPAYSDADRLKILKTINESSMNQIANYDITKARATKLQNWKNRHGPLQ 84

Query: 342 TLSDLPLIEGFTDKTAKKLCDSILNGPTEEVEQI-SNKIK----GQILHPNLKESTIKDC 506
            LSD+  +EGF  K   K   S+L  P+    Q+  N+ K       + P + E      
Sbjct: 85  ELSDILYVEGFGLKVTTKFFKSLLAPPSSGSAQVGENRPKTARVAPFITPAMDEGQRSRI 144

Query: 507 KTVLTVYISVNSVCWTLINKNDYE----VVEWQYYSIDYPEGKKIQITDIFDIAWRITQR 674
            + + V I V SV W  +     E    +  WQ++ ++    KK+ ++++      ++ +
Sbjct: 145 VSAVGVRIGVTSVSWARLKIGSNEAPCLLTHWQHHELN---DKKLHLSELSRRCLYVSHQ 201

Query: 675 LPVADIYVMKAEATTLRAAGXDPNNPKVLAVNLXKAQMVSMI 800
           +PVAD YVM  E+  +  A  +P +     VN+ KAQ+ +++
Sbjct: 202 IPVADCYVM--ESPQMAQASSNPGSIDQQNVNIQKAQVSAIM 241


>AF492764-2|AAM11674.1|  849|Drosophila melanogaster pol protein
           protein.
          Length = 849

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +3

Query: 417 GPTEEVEQISNKIKGQILHPNLKESTIKDCKT-VLTVYISVNSVCWTLINKNDYEVVEWQ 593
           GP   +E      K QI+H + KE T++  K  +L  + S NS  + + +  D+E+++  
Sbjct: 628 GPNSSIEH-ETYFKKQIIHISYKEMTLEAAKQYLLNHFCSKNSALY-IESDADFEMIQNA 685

Query: 594 YYSIDYPEGKKI 629
           Y +   P+  KI
Sbjct: 686 YTTTMNPKCTKI 697


>AE014297-3957|AAF56597.1| 1304|Drosophila melanogaster CG6490-PA
           protein.
          Length = 1304

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = +3

Query: 522 VYISVNSVCWTLINKNDYEVVEWQYYSIDYPEGKKIQITDIFDIAWRITQRLPVADIYVM 701
           V +S NSV +++ N +     E +Y  I   E +  Q+  I     RI  RLPV  +Y+ 
Sbjct: 324 VRLSNNSVAYSITNASIARH-EGRYSCITPLETQNFQV--IVTTPPRIVSRLPVEVVYIG 380

Query: 702 KAEATTLRAAG 734
            +   T RA G
Sbjct: 381 LSRTLTCRAEG 391


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,019,135
Number of Sequences: 53049
Number of extensions: 509787
Number of successful extensions: 1491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)