Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C14
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc...    42   1e-04
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    33   0.067
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    28   1.4  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    27   4.4  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    26   5.8  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   5.8  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   5.8  

>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 182

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
 Frame = +2

Query: 287 LENRHAYPEFLPDPNPKWRNSLREKL------ERADMLKRRNQIDIPEFYVGSILAVTIA 448
           L+  + +P+ +P P  K   SL EK       E+++  K  ++        G++L V   
Sbjct: 25  LKRPYNFPKPVPGPKHKDVLSLFEKKCRSVLDEQSERFKMFHRSQPNRVRPGAVLLVESY 84

Query: 449 DPH-SQGKTNRFVGICIERKGCGLRAEFTLRNVVDHQGVEVRYDLYDPTIHKIQVLR 616
             + S+   NRF G  +  +  G ++   LRNVV   GVE    +Y P I +I VL+
Sbjct: 85  SKYPSKDSVNRFAGYLLRIRHRGPKSSILLRNVVMGVGVEYLLPIYSPQIKRIVVLK 141


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 32.7 bits (71), Expect = 0.067
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = -1

Query: 255 DVSAFSVTSSDASFAFSGSEDKVRQSLRVNHFATVNSSVDFLKVTAIGTSLIK 97
           + SAFS+  SDAS +FS S DK  + + V+ +  + + +D L +T +   L K
Sbjct: 593 EYSAFSLAHSDASLSFSNSRDKKMEEI-VSRY--LENDMDLLGLTGVEDKLQK 642


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
 Frame = +2

Query: 629 LDDKLFYLRDALPEYSTFSFDMDPEILP----EGTPVPIN 736
           LDD LF L   +  +S F F + P   P       P PIN
Sbjct: 119 LDDFLFALESVVSHHSRFQFSLTPSTTPPPSSASAPFPIN 158


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 173 RRDCRTLSSLPEKAKLASLEVTEKAETSRRRPKKVNPLLE 292
           ++D     S+P+   L   +VT KAE  R+R +K + L E
Sbjct: 107 QQDSHDAESIPQFGLLTGKQVTFKAEERRKREEKSSNLDE 146


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 239 EKAETSRRRPKKVNPLLENRHAY--PEFLPDPNPKWRNSLREKLER 370
           E   T R++   +  + ENR+    P F   P  KW +   EKLE+
Sbjct: 83  ENVRTVRKQRSSLYHISENRNLVRLPSFTDVPVNKWHSLALEKLEQ 128


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 239 EKAETSRRRPKKVNPLLENRHAYPEFLPDPNPKWRNSLREKLERAD 376
           ++ +  R + K++  LLE+ HA  E   D   + R+  R +  R D
Sbjct: 120 DQGQNVRTKAKEITSLLEDEHALKEARGDSRERDRDRDRTRSSRFD 165


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 605  ESCVLLDHIDHSVPQLLDDQQHSLE*TQLSIHIL 504
            ESC+L++H D  +  +LD  Q S +  +++ HIL
Sbjct: 1115 ESCILINHAD-ILSSILDYLQVSKDKRRMATHIL 1147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,281
Number of Sequences: 5004
Number of extensions: 70542
Number of successful extensions: 246
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)