Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_C14
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0787 - 5907355-5907457,5908328-5908461,5908542-5908628,590... 63 3e-10
02_04_0041 + 19177225-19177327,19178322-19178433,19178617-191787... 52 8e-07
01_01_0093 + 727977-729854,729877-729930 34 0.16
12_01_0205 - 1540849-1541245,1541361-1541631,1541964-1542196,154... 31 1.5
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 29 3.5
12_02_0738 + 22669557-22669756,22669868-22669916,22670620-226706... 29 4.6
12_01_0911 + 8868557-8868664,8869415-8869420,8869774-8869928,887... 29 4.6
02_01_0679 - 5048653-5051394 29 4.6
05_03_0612 - 16177362-16178102,16178404-16178539,16180612-161806... 29 6.1
12_01_0194 + 1441406-1441726,1442416-1442559,1443172-1443666 28 8.1
01_01_0889 + 7008077-7009261 28 8.1
>02_01_0787 -
5907355-5907457,5908328-5908461,5908542-5908628,
5908733-5908924,5909036-5909188
Length = 222
Score = 62.9 bits (146), Expect = 3e-10
Identities = 44/149 (29%), Positives = 70/149 (46%)
Frame = +2
Query: 218 LASLEVTEKAETSRRRPKKVNPLLENRHAYPEFLPDPNPKWRNSLREKLERADMLKRRNQ 397
+ L AE S +P +E+ PD + ++ K E D K R +
Sbjct: 72 MRGLSTVGSAEVSVEEESSDSPGVEHPPRIKFKRPDKTARHIMNILNK-EAVD--KVRGE 128
Query: 398 IDIPEFYVGSILAVTIADPHSQGKTNRFVGICIERKGCGLRAEFTLRNVVDHQGVEVRYD 577
+IP+ G I+ + + P ++ + + GI I R+ G+ F LR +V GVE +
Sbjct: 129 REIPDVQPGCIIQMRLQVPENKRRESTLKGIVIGRRNAGINTTFRLRRLVAGVGVESVFP 188
Query: 578 LYDPTIHKIQVLRVEKRLDDKLFYLRDAL 664
LY P I +I+VL +K KL+YLRD +
Sbjct: 189 LYSPNIKEIKVLDRKKVRRAKLYYLRDRM 217
>02_04_0041 +
19177225-19177327,19178322-19178433,19178617-19178728,
19178992-19179078,19179161-19179279,19180204-19180306
Length = 211
Score = 51.6 bits (118), Expect = 8e-07
Identities = 34/101 (33%), Positives = 52/101 (51%)
Frame = +2
Query: 362 LERADMLKRRNQIDIPEFYVGSILAVTIADPHSQGKTNRFVGICIERKGCGLRAEFTLRN 541
+E AD K + +IP+ G IL + + P + + + GI I R+ G+ F LR
Sbjct: 113 MEAAD--KVLGEREIPDVQPGCILQMRLQVPEKKRRESTLKGIVIARRNAGINTTFRLRR 170
Query: 542 VVDHQGVEVRYDLYDPTIHKIQVLRVEKRLDDKLFYLRDAL 664
+V GV+ Y P I +I+VL +K KL+YLRD +
Sbjct: 171 LVAGVGVD-----YSPNIKEIKVLDRKKVRRAKLYYLRDRM 206
>01_01_0093 + 727977-729854,729877-729930
Length = 643
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 116 MAVTLRKSTELFTVAKWLTRRDCRTLSSLPEKAKLASLEVTEKAETSRRRP-KKVNPLLE 292
M V ++ E+ A W + DC+ + E K +LE T ET+ VNPL
Sbjct: 572 MQVHEQEVIEMMKFAMWCLQIDCKRRPQMSEVVK--ALEGTISIETNIVHDFVAVNPLWA 629
Query: 293 NRHAYPEFLPDP 328
H P+ PDP
Sbjct: 630 QLHLLPQIYPDP 641
>12_01_0205 -
1540849-1541245,1541361-1541631,1541964-1542196,
1542339-1542601,1542739-1542915,1543032-1543212,
1543273-1543392,1543513-1543629,1544586-1544645,
1545103-1545224,1545374-1545541
Length = 702
Score = 30.7 bits (66), Expect = 1.5
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Frame = +2
Query: 293 NRHAYPEFLPDPNPKWRNSL---REKLERADMLKRRNQIDIPEFYVGSILAVTIADPHSQ 463
+R A F+PDPNPK+ N + ++K + + +R E Y L TI + S
Sbjct: 507 DRSAAEFFIPDPNPKYLNKIFITKDKYRQYGLWER-----YAELYPDGDLVFTIGE--SD 559
Query: 464 GKTNRFVGICIERKGCGLRA-----EFTLRNVVDHQGVEVRYDLYDPTIHKIQVLRVEKR 628
+ F ++G G A F L VV +R +L + ++QV+ V R
Sbjct: 560 ISKDWFFAHVTRKQGDGYAATTRQIRFRLERVVADATYTLRVELAAAQMARVQVV-VNGR 618
Query: 629 LDDKL 643
D+ L
Sbjct: 619 ADEAL 623
>12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 101 IKEVPMAVTLRKSTELFTVAKWLTRRDCRTLSSLPE 208
+KE+P+ +L KS L T + L +C L LPE
Sbjct: 963 LKEIPLLASLPKSIMLLTSLEKLAIVECDNLKELPE 998
>12_02_0738 +
22669557-22669756,22669868-22669916,22670620-22670657,
22670977-22671058,22671146-22671195,22671381-22671847,
22671992-22672155,22672242-22672448,22672554-22672710,
22672858-22672965,22673161-22673234,22673364-22673521,
22673728-22673788,22673858-22673965
Length = 640
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 278 NPLLENRHAYPEFLPDPNPKWRNSLREKLERADML 382
NP + H YP+ P P P W+ L+ + +D +
Sbjct: 497 NPNDVSTHDYPDQAPTPFPDWQQDLQRLMSSSDTI 531
>12_01_0911 +
8868557-8868664,8869415-8869420,8869774-8869928,
8870145-8871031,8871079-8871123,8872528-8872572,
8873025-8873513,8873603-8873733
Length = 621
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 358 FSQGITPFRVRIRQKFGVGMSILQQRIHLFR 266
F+QG + ++ RIR F G S+ QQRI R
Sbjct: 387 FAQGSSVWQQRIRASFAQGSSVWQQRIRAKR 417
>02_01_0679 - 5048653-5051394
Length = 913
Score = 29.1 bits (62), Expect = 4.6
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +2
Query: 101 IKEVPMAVTLRKSTELFTVAKWLTRRDCRTLSSLPEKAK-LASLEVTEKAETS-RRRPKK 274
+++ P+ +LF + ++L R R + SLP K L +LE + T+ R P++
Sbjct: 585 LRDSPLDKIPENIGDLFNL-RYLGLRRTR-IKSLPISIKKLTNLETLDLKSTNIERLPRE 642
Query: 275 VNPLLENRHAYPEFLPDPNPK 337
V L + RH + E L DP +
Sbjct: 643 VAKLKKLRHIFAEQLYDPEER 663
>05_03_0612 -
16177362-16178102,16178404-16178539,16180612-16180658,
16181002-16181082,16181765-16181846,16181924-16182036,
16182349-16182456,16182531-16182642,16182738-16182847,
16183105-16183242,16183370-16183834
Length = 710
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 134 KSTELFTVAKWLTRRDCRTLSSLPEKAKLASLEVTEKAETSRRRP-KKVNPLLE 292
+ TE W+T D + S+ +++KLASL+++ + E ++ P K N +E
Sbjct: 589 EETEFPPARSWVTEGDYISWSNGSDESKLASLKISWELENKQQAPFMKYNVYVE 642
>12_01_0194 + 1441406-1441726,1442416-1442559,1443172-1443666
Length = 319
Score = 28.3 bits (60), Expect = 8.1
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Frame = +2
Query: 140 TELFTVAKWLT---RRDCRTLSSLPEKAKLASLEVTEKAETSRRRPKKVNPLLENRHAYP 310
TEL V WL R +CR LS E A ++T+ + + ++ + ++++
Sbjct: 169 TELLKVC-WLDLCGRVNCRELSPNTEYAAYLVFKLTDDSYGLDCQTQEADITMDDQVVSA 227
Query: 311 E----FLPDPNPKWRNSLREKLERADMLKRRNQIDIPEF 415
+ F P P P+ R S RE L ++ Q + P +
Sbjct: 228 KRTISFYPRPRPRPRPSTRETLSNMGRIEEAGQAEEPSY 266
>01_01_0889 + 7008077-7009261
Length = 394
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 257 RRRPKKVNPLLENRHAYPEFLPDPNPKWRNSLREKLERA 373
R +PKK +P + A P P P P R+ +R K A
Sbjct: 261 RNKPKKKSPSTASSKAAPPPPPPPPPTTRHQIRRKRRAA 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,309,679
Number of Sequences: 37544
Number of extensions: 421143
Number of successful extensions: 1203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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