Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C14
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    23   3.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   4.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   8.1  

>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 394 ISTFQHIRPFQLFSQGITPFRVRIR 320
           I  F+HI P  LF + I P   R+R
Sbjct: 138 IPRFRHIGPSTLFPRFIPPNAYRLR 162


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 297 DMPTPNFCLIRTLNGVIPCEKSWKGRIC 380
           D    NF + R  N +  CE   K  +C
Sbjct: 90  DKKEENFIVDRLRNDLFECENKEKSNVC 117


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 275 VNPLLENRHAYPEFLPDP 328
           +NP L ++H  P+FL  P
Sbjct: 12  LNPKLYDKHRAPKFLGQP 29


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 587 PTIHKIQVLRVEKRLDDKLFYLRDA 661
           PT  K  V  +EK +DD  F  + A
Sbjct: 502 PTFEKPLVREIEKTIDDARFIAQHA 526


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 326 PNPKWRNSLREKLERADMLKRRNQID 403
           P+      L +++   D+LK+RN+ D
Sbjct: 118 PHELKEKHLTQRINSCDLLKKRNEND 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,188
Number of Sequences: 438
Number of extensions: 4574
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)