Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_C12
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 46 4e-06
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 37 0.004
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.008
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 35 0.015
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.019
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 33 0.059
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 32 0.078
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.078
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.18
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 31 0.24
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.31
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 30 0.31
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 28 1.3
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ... 27 2.9
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 3.9
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.0
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 25 9.0
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 9.0
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 25 9.0
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 46.4 bits (105), Expect = 4e-06
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +2
Query: 131 QTXVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTF 310
+T +FVG +P + ED+ F+ +G + +C +MN GFV ++ A + F
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEF 62
Query: 311 NGGVISVE 334
G I VE
Sbjct: 63 MGSRIVVE 70
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 36.7 bits (81), Expect = 0.004
Identities = 31/127 (24%), Positives = 40/127 (31%), Gaps = 3/127 (2%)
Frame = +2
Query: 140 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNSTFN 313
VFVG L + E+L+ LF+ FG + I CGFV + A AI L
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLG 364
Query: 314 GGVISVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRHAPPPRD-APYMRDRPGPVR 490
I + P PP +PY P P+
Sbjct: 365 NSRIRLSWGRNQNPIAAPALNYQSQVSQTTIPATSLFPAMSLPPQAQFSPYPAVAPSPLA 424
Query: 491 GYERGPP 511
RG P
Sbjct: 425 LQTRGAP 431
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.5 bits (78), Expect = 0.008
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Frame = +2
Query: 140 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMN-------RCGFVHMQTEEQAAAAIRALH 298
V+VG+L + +L++ + G V C+I+N C + T E+A AI+ L
Sbjct: 68 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLS 127
Query: 299 NSTFNGGVISV 331
N F G ++ +
Sbjct: 128 NQKFMGRLVYI 138
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = +2
Query: 140 VFVGSLPQGSKPEDLRKLFERFGVVTECDI-------MNRCGFVHMQTEEQAAAAIRALH 298
++VG+LP + +L LF G V I G V + E AA++I L+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 299 NSTFNG 316
+ G
Sbjct: 342 GYRYGG 347
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 34.7 bits (76), Expect = 0.015
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Frame = +2
Query: 140 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMN---------RCGFVHMQTEEQAAAAIRA 292
++VG L + DL F RFG V+ +I+N R +++ +T+E ++
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCKS 66
Query: 293 -LHNSTFNGGVISVE 334
L N+TF G + +E
Sbjct: 67 YLSNATFKGSKLRIE 81
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.019
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Frame = +2
Query: 140 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR-------------CGFVHMQTEEQAAA 280
++VG+LP + DL +LFE FG ++ +++R F+ + + A
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 281 AIRALHNSTFNGGVISVE 334
AI +L+ S+F G + VE
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 32.7 bits (71), Expect = 0.059
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 140 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNSTFN 313
VF+G+LP G +++R+ E FG + + I+ FVH AAAI+A+ N
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFL---NIAAAIKAVQELPLN 264
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 32.3 bits (70), Expect = 0.078
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 134 TXVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 313
T V+V LP+ ++LR F FG + + N G + A AI ++N +
Sbjct: 176 TAVYVHQLPENITTQELRSYFLHFGEILYTQVNNNSGRIVFAQRYFAEQAINEMNNFPLH 235
Query: 314 G 316
G
Sbjct: 236 G 236
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.078
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 140 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--CGFVHMQTEEQAAAAIRAL 295
VF+G+LP +++ + F +FG + I+++ FVH A +R L
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTL 354
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.1 bits (67), Expect = 0.18
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 140 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMN---RCGFVHMQTEEQAAAAIRALHNSTF 310
+F+G + + + LR +FERFG V I+N R GF+ M + A A A+ N F
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSL-ILNHNYRHGFLKMFRRDAAEKAQVAMENVPF 466
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.7 bits (66), Expect = 0.24
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 128 PQTXVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 232
P+ +FV L ++ EDL +F RFG + C ++
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVI 276
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 30.3 bits (65), Expect = 0.31
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +2
Query: 140 VFVGSLPQG-SKPEDLRKLFERFGVVTECDIMNR-----CG--FVHMQTEEQAAAAIRAL 295
+ + +LP KP+ L F +FG V E I + CG FV M+ + A A+ +L
Sbjct: 109 LIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSL 168
Query: 296 HNSTFNGGVISVE 334
+ + +G I+V+
Sbjct: 169 NGTEIDGRPIAVD 181
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 30.3 bits (65), Expect = 0.31
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 140 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM 232
+F+G L + + LR FE+FG V +C +M
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVM 195
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 140 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM 232
+FVG +P E+ R F +FG V + +M
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 140 VFVGSLPQGSKPEDLRKLFERFGVVTECDI 229
VFVG L +K ++R LFE G V + I
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 140 VFVGSLPQGS-KPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNG 316
+F+G L S +L K+F+ +G + + + GFV T E A A+ A + G
Sbjct: 365 LFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVRG 424
Query: 317 GVISVE 334
+ +E
Sbjct: 425 QKLHLE 430
>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 460 IHEGPARSGARLRTRSAGGAL*RALCVRRGPAWVRADG 573
I++ P +SG R+ AG L LC + G + DG
Sbjct: 163 IYQHPVQSGMRVLELGAGTGLVSILCAKMGSIVLATDG 200
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Frame = +2
Query: 140 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRALH 298
VF+ +L + L F FG + C + GFVH + E A AAI ++
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 299 NSTFN 313
N
Sbjct: 230 GMLLN 234
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 140 VFVGSLPQGSKPEDLRKLFERFGVV 214
+FVG+LP+ S E L+ F+R G V
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQV 118
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 303 LHLTAASYPWSAVASKNAGSVGAVAVDEV 389
+H+ + P +A KNA S+GA V+ V
Sbjct: 546 IHIYSVERPMKYIAMKNAHSLGATQVEWV 574
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 443 GARVARGRLRDAPCHRAWNLVH 378
G RV +RDA C+ W+ H
Sbjct: 421 GTRVTGQSIRDASCYFVWSFYH 442
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 61 LNLNVTFNLHHFLE 102
LN N+T+NL HF E
Sbjct: 83 LNRNITYNLQHFYE 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,011
Number of Sequences: 5004
Number of extensions: 39485
Number of successful extensions: 110
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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