Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C10
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...   175   3e-44
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449...   159   1e-39
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415...    30   1.5  
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    27   8.0  

>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score =  175 bits (425), Expect = 3e-44
 Identities = 90/141 (63%), Positives = 101/141 (71%), Gaps = 21/141 (14%)
 Frame = +2

Query: 104 LXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA---------------------K 220
           L M  + L++L           GLKRKPMAL+KKLR+A                     K
Sbjct: 270 LDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAGSNFEGTVFRLGFYEAGSYFVK 329

Query: 221 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 400
           K+AP  EKPE V+THLRNMIIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YK
Sbjct: 330 KDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYK 389

Query: 401 PVKHGRPGIGATHSSRFIPLK 463
           PVKHGRPGIGATHSSRFIPLK
Sbjct: 390 PVKHGRPGIGATHSSRFIPLK 410



 Score = 33.9 bits (74), Expect = 0.093
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +1

Query: 52  KRIFRKFTYRGVDLDQLL 105
           KR FRK++YRGVDLD LL
Sbjct: 253 KRTFRKYSYRGVDLDALL 270


>07_01_0604 -
           4491884-4491993,4493030-4493225,4494269-4494326,
           4494459-4494613,4495092-4495115,4495377-4495489,
           4499943-4500129
          Length = 280

 Score =  159 bits (386), Expect = 1e-39
 Identities = 73/103 (70%), Positives = 84/103 (81%)
 Frame = +2

Query: 104 LXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMII 283
           L M  + L++L           GLKRKPMAL+KKLR+AKK+AP  EKPE V+THLRNMII
Sbjct: 142 LDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMII 201

Query: 284 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 412
           VPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKH
Sbjct: 202 VPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 244



 Score = 33.9 bits (74), Expect = 0.093
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +1

Query: 52  KRIFRKFTYRGVDLDQLL 105
           KR FRK++YRGVDLD LL
Sbjct: 125 KRTFRKYSYRGVDLDALL 142


>06_01_0580 +
           4148969-4149101,4149394-4149546,4149682-4150095,
           4150218-4150294,4151479-4152699,4153057-4153128
          Length = 689

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 14  QETWLRSTKPSXKSVFSGSSLTGELIS----ISSLXMPNEQLME 133
           Q+ W+         VFSGSSLT  L S    + S  +P ++L+E
Sbjct: 375 QQNWIHQEGNGLSDVFSGSSLTNTLSSTLQRVPSSSLPPQELLE 418


>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 286 NDDHVSQVSLHDLWLLIRRSLFLGATQLLDQCHWFT 179
           +DD+V+ VSL+ L  L    ++L    L  +CH+FT
Sbjct: 655 DDDNVTPVSLNKLVSLTIAEIWLYGCLLRFRCHFFT 690


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,227,194
Number of Sequences: 37544
Number of extensions: 245722
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)