Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C07
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1342 + 29461083-29461365,29461991-29462029,29462257-29462285     34   0.16 
04_01_0273 - 3631903-3632527,3633566-3633742,3633890-3634120,363...    30   2.0  

>06_03_1342 + 29461083-29461365,29461991-29462029,29462257-29462285
          Length = 116

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 328 CVVCKAQMPDPKTYKQHFENKHPKNDL-PDDLKNI 429
           C +CK   PD K+ + H E +HPK    PD L N+
Sbjct: 49  CPLCKTTAPDIKSMQIHHEARHPKLPFEPDKLNNL 83


>04_01_0273 -
           3631903-3632527,3633566-3633742,3633890-3634120,
           3634431-3634636
          Length = 412

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 285 HRPEESCTKGTCPCLCGL*GPDA 353
           H P + CT G  P LCGL  P+A
Sbjct: 390 HAPNDRCTLGGVPVLCGLRKPNA 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,120,538
Number of Sequences: 37544
Number of extensions: 299919
Number of successful extensions: 563
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)