Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C07
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68213-4|CAA92441.1|   73|Caenorhabditis elegans Hypothetical pr...    77   2e-14
AF202929-1|AAK69379.1|   73|Caenorhabditis elegans Nx protein.         77   2e-14
Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical p...    34   0.11 
AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical ...    34   0.11 
U49941-10|AAB53870.1|   73|Caenorhabditis elegans Hypothetical p...    30   1.8  
U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    29   4.1  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    29   4.1  
Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc ...    29   5.5  
AF300704-1|AAG24400.1|  622|Caenorhabditis elegans incenp-like p...    29   5.5  
AC025716-5|AAK39616.1|  622|Caenorhabditis elegans Incenp homolo...    29   5.5  
Z92786-1|CAB07203.1|  250|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical...    28   9.5  

>Z68213-4|CAA92441.1|   73|Caenorhabditis elegans Hypothetical
           protein C01F6.9 protein.
          Length = 73

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 40/74 (54%), Positives = 43/74 (58%)
 Frame = +1

Query: 199 MARGHQKIXXXXXXXXXXXXXXXXXGHSATDQKKAAQKALVHVCVVCKAQMPDPKTYKQH 378
           MARG QKI                   +  DQK AA KAL H C VC A MPDPKTYKQH
Sbjct: 1   MARGQQKIQSQQKNQKKADAARK----AGIDQKAAAAKALNHKCTVCLAMMPDPKTYKQH 56

Query: 379 FENKHPKNDLPDDL 420
           FENKHPK+ LP +L
Sbjct: 57  FENKHPKSPLPAEL 70


>AF202929-1|AAK69379.1|   73|Caenorhabditis elegans Nx protein.
          Length = 73

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 40/74 (54%), Positives = 43/74 (58%)
 Frame = +1

Query: 199 MARGHQKIXXXXXXXXXXXXXXXXXGHSATDQKKAAQKALVHVCVVCKAQMPDPKTYKQH 378
           MARG QKI                   +  DQK AA KAL H C VC A MPDPKTYKQH
Sbjct: 1   MARGQQKIQSQQKNQKKADAARK----AGIDQKAAAAKALNHKCTVCLAMMPDPKTYKQH 56

Query: 379 FENKHPKNDLPDDL 420
           FENKHPK+ LP +L
Sbjct: 57  FENKHPKSPLPAEL 70


>Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 322 HVCVVCKAQMPDPKTYKQHFENKH 393
           HVCV+C  QMP   T ++H E +H
Sbjct: 336 HVCVLCNHQMPKTVTVQEHMEKEH 359



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +1

Query: 322 HVCVVCKAQMPDPKTYKQHFENKH 393
           H+C++C  ++P+ +T ++H +NKH
Sbjct: 39  HMCLLCNRRIPENETLREHMKNKH 62



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 322 HVCVVCKAQMPDPKTYKQHFENKH 393
           H C++C  Q+P+ +T + H +++H
Sbjct: 206 HTCLLCNRQIPENETVRDHMKSQH 229


>AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 322 HVCVVCKAQMPDPKTYKQHFENKH 393
           HVCV+C  QMP   T ++H E +H
Sbjct: 336 HVCVLCNHQMPKTVTVQEHMEKEH 359



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +1

Query: 322 HVCVVCKAQMPDPKTYKQHFENKH 393
           H+C++C  ++P+ +T ++H +NKH
Sbjct: 39  HMCLLCNRRIPENETLREHMKNKH 62



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 322 HVCVVCKAQMPDPKTYKQHFENKH 393
           H C++C  Q+P+ +T + H +++H
Sbjct: 206 HTCLLCNRQIPENETVRDHMKSQH 229


>U49941-10|AAB53870.1|   73|Caenorhabditis elegans Hypothetical
           protein K10B3.1a protein.
          Length = 73

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +1

Query: 199 MARGHQKIXXXXXXXXXXXXXXXXXGHSATDQKKAAQKALVHVCVVC 339
           MARGHQK                  G   +DQK AA  +L H C VC
Sbjct: 1   MARGHQKALSQQRNAEKTAKAKKAVG---SDQKNAAMASLHHKCTVC 44


>U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical
           protein C09F5.3 protein.
          Length = 359

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 322 HVCVVCKAQMPDPKTYKQHFENKHPK 399
           H+C +C +  P P+    HF   H K
Sbjct: 183 HICSICDSAFPSPQAQSVHFAEAHKK 208


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 195 HNGSRTPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKG-TC 320
           H+G  +PE +    + GK  ++E T      +P ESCT+G TC
Sbjct: 759 HDGCVSPEEAARRKARGK-ARHEATTARLYSKPGESCTQGQTC 800


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 195 HNGSRTPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKG-TC 320
           H+G  +PE +    + GK  ++E T      +P ESCT+G TC
Sbjct: 856 HDGCVSPEEAARRKARGK-ARHEATTARLYSKPGESCTQGQTC 897


>Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical
           protein M04B2.1 protein.
          Length = 870

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 283 ATDQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKND 405
           A  Q K     +++ C VC  +    +T + H  + HPK D
Sbjct: 813 ADHQVKLCSAEIMYSCDVCAFKCSSYQTLEAHLTSNHPKGD 853


>AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc
           finger protein protein.
          Length = 870

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 283 ATDQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKND 405
           A  Q K     +++ C VC  +    +T + H  + HPK D
Sbjct: 813 ADHQVKLCSAEIMYSCDVCAFKCSSYQTLEAHLTSNHPKGD 853


>AF300704-1|AAG24400.1|  622|Caenorhabditis elegans incenp-like
           protein ICP-1 protein.
          Length = 622

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 292 QKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKNDLPDD 417
           +K+A Q+AL         +M  P+TY+ + +N +  NDL  D
Sbjct: 493 EKQARQEALRKTPPPAAYEMTPPRTYQNNSKNDYGLNDLNSD 534


>AC025716-5|AAK39616.1|  622|Caenorhabditis elegans Incenp homolog
           protein 1 protein.
          Length = 622

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 292 QKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKNDLPDD 417
           +K+A Q+AL         +M  P+TY+ + +N +  NDL  D
Sbjct: 493 EKQARQEALRKTPPPAAYEMTPPRTYQNNSKNDYGLNDLNSD 534


>Z92786-1|CAB07203.1|  250|Caenorhabditis elegans Hypothetical
           protein F47H4.1 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 277 HSAT-DQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKH 393
           HSA+ ++ +    +  H C++C+  +   +T ++H  N+H
Sbjct: 36  HSASLNRHRQLMHSNEHTCMMCERALNQKETIREHMRNEH 75


>AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical
           protein Y39B6A.27 protein.
          Length = 473

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 392 CLFSKCCL*VLGSGIWALQTTQTWTSAFCAAFFWSVALCPCCFF 261
           C  S CC+  + S I AL      + +F  A  +    C  CFF
Sbjct: 368 CGMSDCCINSVRSVICALVMPSRRSQSFAVARMYHAFACTICFF 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,039,550
Number of Sequences: 27780
Number of extensions: 301903
Number of successful extensions: 704
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)