Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C06
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0260 - 21761145-21762416                                         30   1.9  
11_01_0800 - 7047425-7048253,7048340-7048927,7049050-7049268,704...    29   5.8  
05_03_0651 + 16605662-16605722,16605920-16606185                       29   5.8  
04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674...    29   5.8  
08_02_0951 + 22976130-22977320                                         28   7.7  

>11_06_0260 - 21761145-21762416
          Length = 423

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 658 DGQVYYVHVGDGLHLGVAQ-DNVYDEGVSEQAYNADQGVQYLRH 530
           DGQ+ +  +GD     +   +N++D G     YN + G+ YL H
Sbjct: 198 DGQLSFARIGDHSWTRLTDIENLWDRGYRCAVYNKNDGLFYLLH 241


>11_01_0800 -
           7047425-7048253,7048340-7048927,7049050-7049268,
           7049398-7049518,7050593-7050983
          Length = 715

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 89  WSKSRVCSSKYFLCVRSESE 148
           WSK  VCS +Y   +R+E+E
Sbjct: 132 WSKHPVCSKRYHFIIRNENE 151


>05_03_0651 + 16605662-16605722,16605920-16606185
          Length = 108

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 508 QSSVRIHRDAGTVRPGLHCRPARKHPR--HIRCPALLQDADRHQHVHSKLGHRGRV 669
           +S+ +I RD G  +     R AR  P+  + RCP ++    RH H  + L  R R+
Sbjct: 49  ESTAKIKRDGGGSKMDKGKR-ARVDPKRWYRRCPRVMNSQHRHYHPFNHLLGRARI 103


>04_04_0867 +
           28865857-28866657,28866778-28867113,28867248-28867451,
           28867567-28867746
          Length = 506

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/84 (26%), Positives = 40/84 (47%)
 Frame = -2

Query: 811 STHYTQEYXTGKLIDPGRNHVSLAHVISKGPLIKGHGRNKERYPDEEALVRDGQVYYVHV 632
           ST   ++Y +    D       LA ++ +GP  KG    +ER   ++ L+R     +  V
Sbjct: 133 STRVLRDYSSAVFRDTA---AELAGILERGPAAKG----RERVDMQDLLMRATLDSFFRV 185

Query: 631 GDGLHLGVAQDNVYDEGVSEQAYN 560
           G G++LGV   +  +  V  +A++
Sbjct: 186 GFGVNLGVLSGSSKEGLVFARAFD 209


>08_02_0951 + 22976130-22977320
          Length = 396

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +3

Query: 135 VLKVNACIAIKTFPVFNQSC---SRYSSGLVHIASATPKQR 248
           +L+   C+ I+ F V++Q C   +R+  G++  A  TP+ R
Sbjct: 210 ILEAMDCVVIEIFEVYSQICTGIARFLVGVLGSAPTTPRPR 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,303,580
Number of Sequences: 37544
Number of extensions: 439204
Number of successful extensions: 1049
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)