Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C04
         (765 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    25   0.88 
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    25   0.88 
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    25   0.88 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   2.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.7  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   6.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.2  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 461 EVGVFLYRGMTVTELVNQCYGNCEDPGKGRQMPVHYGSKHH 583
           +VG++ +     T   +  Y    D    +QMP HY + H+
Sbjct: 4   DVGMYGHHSQHGTYPSDNYYNYTSDIPNAQQMPPHYSNYHY 44


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 461 EVGVFLYRGMTVTELVNQCYGNCEDPGKGRQMPVHYGSKHH 583
           +VG++ +     T   +  Y    D    +QMP HY + H+
Sbjct: 4   DVGMYGHHSQHGTYPSDNYYNYTSDIPNAQQMPPHYSNYHY 44


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 461 EVGVFLYRGMTVTELVNQCYGNCEDPGKGRQMPVHYGSKHH 583
           +VG++ +     T   +  Y    D    +QMP HY + H+
Sbjct: 4   DVGMYGHHSQHGTYPSDNYYNYTSDIPNAQQMPPHYSNYHY 44


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 524 NCEDPGKGRQMPVHYGSKHHNMVTISSPLG 613
           N +DP + RQM V +GS   N   I +PLG
Sbjct: 266 NLKDPCRRRQMYVDFGSVGWN-DWIVAPLG 294


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 103  PRTRRQKPSSPSKSI*FDKTCSGLQRHL 20
            PRTR +KP  PS     + + + +  HL
Sbjct: 1484 PRTRGEKPIVPSAEKFIEVSSNSITLHL 1511


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 351 CDSYRILSIWLSCTMVLY 298
           CD   IL  W+ C + L+
Sbjct: 317 CDIATILDFWVRCVLSLH 334


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 561 TGICLPFPGSSQFP*HWFTSSVTVIP 484
           TG+  P PG S  P H  +    V P
Sbjct: 227 TGLIPPHPGLSPHPPHLSSHPAIVTP 252


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 561 TGICLPFPGSSQFP*HWFTSSVTVIP 484
           TG+  P PG S  P H  +    V P
Sbjct: 119 TGLIPPHPGLSPHPPHLSSHPAIVTP 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,653
Number of Sequences: 336
Number of extensions: 4033
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)