Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_C04
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 63 4e-11
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 28 1.7
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 27 2.2
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.9
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 5.1
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 5.1
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.8
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 26 6.8
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 25 9.0
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 25 9.0
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 63.3 bits (147), Expect = 4e-11
Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 4/191 (2%)
Frame = +2
Query: 203 EPIPIYRVMDN--NGQIID-KNEEPNLDKATLINMYKTMVQLSHMDKILYESQRQGRI-S 370
+P P+ ++ D+ G ID + E + K L+ +Y+ MV + ++ + +I
Sbjct: 48 KPFPV-KLDDSVFEGYKIDVPSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKKIRG 106
Query: 371 FYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTELVNQCYGNCEDPGKGR 550
F + G+E + G A++ D + + YR G RG+++ ++ + G KG+
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIITSYRCHGFAYTRGLSIRSIIGELMGRQCGASKGK 166
Query: 551 QMPVHYGSKHHNMVTISSPLGTQMPQAVGAAYAYKRVPNNDRCVICYFGDGAASEGDAHA 730
+H +K N + +G Q+P G +A K + +GDGA+++G A
Sbjct: 167 GGSMHIFAK--NFYGGNGIVGAQIPLGAGIGFAQKYL-EKPTTTFALYGDGASNQGQAFE 223
Query: 731 AFNFAATLXCP 763
AFN A P
Sbjct: 224 AFNMAKLWGLP 234
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1
Query: 333 LSIWLSCTMVLYMLISVALSKF-GSSFLSMI 244
LSIW S M+LY L+ V F GSS +S++
Sbjct: 237 LSIWQSLVMILYYLLYVLFVFFSGSSGVSVV 267
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +2
Query: 167 VSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSH 325
+SE+++ + +P Y + D DK+ PN+D + + T+V L +
Sbjct: 592 LSEIRYSLRELVQDLPSYSLFDTLWVFYDKHIYPNVDPDYISTLIDTLVSLEN 644
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 382 QLRRGGHPHRQRLGTLTERFGLQSIQRS-RSVFIPRDDCDGTCEPVLR 522
++RR G +RQ T +RF + S + S + + D CE +L+
Sbjct: 641 RIRRAGFAYRQAFDTFAQRFAVLSGKTSYAGEYTWQGDDKSACEQILK 688
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 521 RNTGSQVPSQSSLGIKTLLLLCI 453
+NTG+ +P Q S ++ L LLC+
Sbjct: 711 QNTGAAIPLQISTNLRLLPLLCL 733
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 182 FFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQ 316
+F ++Y+ I +DNN ++D N PN + ++ + Y + Q
Sbjct: 268 YFPNSTYQNI--LNSLDNNPAVLDLNGPPNQESSSSASSYGSRTQ 310
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 510 TSVTETARIPGKGDRCRSITEASTTTWSQYLVH*EHKCPR 629
TS+TE A P S +TT + Y+V EH P+
Sbjct: 150 TSITEPANSPSSSSSSASTKSTATTQSADYVVA-EHFAPQ 188
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = -3
Query: 169 HVRCSCARKFCYLTTAILCRFGPRTRRQKPSS 74
H+ C C FC+L A L P P S
Sbjct: 383 HMNCLCGTHFCFLCGAYLMEQNPYKHFNDPVS 414
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 2 GRPMSLKMALKTGASFVKLNAF 67
G PM L A++TG SF K+ F
Sbjct: 172 GTPMRLVQAIQTGLSFEKVEFF 193
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 25.4 bits (53), Expect = 9.0
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Frame = +2
Query: 584 NMVTISSPLGTQMPQAVGAAY------AYKRVPNND---RCVICYFGDGAASEGDAHAAF 736
N+ T + PLG + AVG A A P D C+ GDG EG + A
Sbjct: 115 NIETGAGPLGQGIASAVGLAIGKAHSAAVYNKPGFDLFSNYTFCFLGDGCLQEGVSSEAC 174
Query: 737 NFAATL 754
+ A L
Sbjct: 175 SLAGHL 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,291
Number of Sequences: 5004
Number of extensions: 65807
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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