Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_C04
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421... 231 3e-61
02_05_0689 - 30937621-30937665,30938143-30938208,30938303-309383... 60 1e-09
06_01_0981 + 7613381-7614086,7614203-7614282,7614883-7614960,761... 55 5e-08
04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403 54 2e-07
08_02_0242 - 14701116-14702666 31 1.3
02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386 29 3.1
09_02_0181 - 5425833-5426527,5426667-5429397 28 9.4
03_02_0713 + 10615886-10616650 28 9.4
>12_01_0535 +
4208410-4208661,4209529-4209627,4210125-4210265,
4210378-4210560,4210664-4210821,4210905-4211004,
4211085-4211196,4211241-4211419,4211489-4211674,
4211762-4211929
Length = 525
Score = 231 bits (566), Expect = 3e-61
Identities = 108/208 (51%), Positives = 140/208 (67%)
Frame = +2
Query: 140 EFPGARAPYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQL 319
+FPG + +V+EM F E+ + I YRV+D++G+ I + + K + MY M L
Sbjct: 121 DFPGGKVSFVAEMNFLPESQRDRINCYRVLDDDGRTISGSRFQEVSKELALKMYNEMATL 180
Query: 320 SHMDKILYESQRQGRISFYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVT 499
MD I +E+QRQGRISFY+T++GEE I+I SA+AL+ D+V QYRE GV L+RG T+
Sbjct: 181 QVMDTIFFEAQRQGRISFYLTSHGEEAINIASAAALTIDDIVLPQYREPGVLLWRGFTLQ 240
Query: 500 ELVNQCYGNCEDPGKGRQMPVHYGSKHHNMVTISSPLGTQMPQAVGAAYAYKRVPNNDRC 679
E NQC+GN D GKGRQMP+HYGS N T+SSP+ TQ+P AVGAAY+ K + D C
Sbjct: 241 EFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLK-MDKKDAC 299
Query: 680 VICYFGDGAASEGDAHAAFNFAATLXCP 763
I YFGDG SEGD HAA NFAA + P
Sbjct: 300 AITYFGDGGTSEGDFHAALNFAAVMEAP 327
>02_05_0689 -
30937621-30937665,30938143-30938208,30938303-30938356,
30938489-30938560,30938648-30938743,30939883-30939960,
30940485-30940564,30940662-30941343
Length = 390
Score = 60.5 bits (140), Expect = 1e-09
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 3/192 (1%)
Frame = +2
Query: 197 SYEPIPIYRVMDNNGQIIDK-NEEPNLDKATLINMYKTMVQLSHMDKILYESQRQGRI-- 367
S P+ I + I+D + + A L+ ++ M + M+ I +S + ++
Sbjct: 29 STAPLTIETSVPFTSHIVDPPSRDVTTTPAELLTFFRDMSVMRRME-IAADSLYKAKLIR 87
Query: 368 SFYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTELVNQCYGNCEDPGKG 547
F G+E + +G +A++ D + + YR+ +L RG + + G +G
Sbjct: 88 GFCHLYDGQEAVAVGMEAAITRSDSIITAYRDHCTYLARGGDLVSAFAELMGRQAGCSRG 147
Query: 548 RQMPVHYGSKHHNMVTISSPLGTQMPQAVGAAYAYKRVPNNDRCVICYFGDGAASEGDAH 727
+ +H+ K N +G Q+P G A+A K + +GDGAA++G
Sbjct: 148 KGGSMHFYKKDANFYGGHGIVGAQVPLGCGLAFAQK-YRKEETATFALYGDGAANQGQLF 206
Query: 728 AAFNFAATLXCP 763
A N +A P
Sbjct: 207 EALNISALWKLP 218
>06_01_0981 +
7613381-7614086,7614203-7614282,7614883-7614960,
7615166-7615261,7615370-7615441,7615676-7615729,
7615819-7615884,7616291-7616335
Length = 398
Score = 55.2 bits (127), Expect = 5e-08
Identities = 34/125 (27%), Positives = 55/125 (44%)
Frame = +2
Query: 389 GEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTELVNQCYGNCEDPGKGRQMPVHY 568
G+E + +G +A + D + + YR+ +L RG + L + G +G+ +H
Sbjct: 103 GQEAVAVGMEAATTRADAIITAYRDHCAYLARGGDLAALFAELMGRRGGCSRGKGGSMHL 162
Query: 569 GSKHHNMVTISSPLGTQMPQAVGAAYAYKRVPNNDRCVICYFGDGAASEGDAHAAFNFAA 748
K N +G Q+P G A+A +R +GDGAA++G A N AA
Sbjct: 163 YKKDANFYGGHGIVGAQVPLGCGLAFA-QRYRKEAAVTFDLYGDGAANQGQLFEALNMAA 221
Query: 749 TLXCP 763
P
Sbjct: 222 LWKLP 226
>04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403
Length = 425
Score = 53.6 bits (123), Expect = 2e-07
Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 9/167 (5%)
Frame = +2
Query: 290 INMYKTMVQLSHMDKILYESQRQGRISFYMTNY-GEEGIHIGSASALSPKDLVFSQYREV 466
+ +Y+ MV + + + +G++ ++ Y G+E + G L+ D V S YR+
Sbjct: 79 LELYEDMVLGRIFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLNQADCVVSTYRDH 138
Query: 467 GVFLYRGMTVTELVNQCYGNCEDPGKGRQMPVHYGSKHHNMVTISSPLGTQMPQAVGAAY 646
L +G+ ++ + +G +G+ +H S+ HN++ + +G +P A GAA+
Sbjct: 139 VHALSKGVPARSVMAELFGKATGCCRGQGGSMHMFSEPHNLLGGFAFIGEGIPVATGAAF 198
Query: 647 AYK--------RVPNNDRCVICYFGDGAASEGDAHAAFNFAATLXCP 763
A K P+ + +FGDG + G N A P
Sbjct: 199 AAKYRHEVLKQSSPDGLDVTLAFFGDGTCNNGQFFECLNMAQLWKLP 245
>08_02_0242 - 14701116-14702666
Length = 516
Score = 30.7 bits (66), Expect = 1.3
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Frame = -1
Query: 303 LYMLISVALSKFGSSFLSMICPLLSITR*IGIGS*LVSLK----NFISLTYGALAPGNSA 136
+++LIS A +K ++ L + CP ++ + + S + +L+ + +S +YG P +
Sbjct: 213 VHLLISAAKTKEETAVLRLRCPTVTTLVLVAVTSRIEALQLDAPSLVSFSYGG-HPMAIS 271
Query: 135 ILPPPFCAVSGLVRVDKSLAARRKAFNLTKLAPVFNAILRLIG 7
+ PPP A LV VD S R +F K PV +LR +G
Sbjct: 272 LAPPP--ANLALVDVDIS----RPSFFTWKYEPVCR-VLRSLG 307
>02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386
Length = 837
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 590 PCCGACFRNGPASVSLSRDPRSFRNTGSQVPSQSS 486
P G C G S+ LSRD R FR+T QV + ++
Sbjct: 172 PTEGPCNGKGCCSIKLSRDLRGFRSTLVQVDATAA 206
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 192 SLKNFISLTYGALAPGNSAILPPPFCAVSGLVRVD 88
+LKNF +LTY L + +P CA++ L +D
Sbjct: 551 TLKNFTALTYLDLCSNSLTNIPGEICALANLEYLD 585
>03_02_0713 + 10615886-10616650
Length = 254
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 177 ISLTYGALAPGNSAILPP-PFCAVSGLVRVDKSLAARRKAFNLTKLAPVFNAI 22
+SL LA +A PP P A + L + S+ RKAF L K NA+
Sbjct: 47 VSLYAARLALALAAGQPPLPHAATARLRSFESSVGLSRKAFRLGKFVQSINAL 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,429,073
Number of Sequences: 37544
Number of extensions: 437923
Number of successful extensions: 1079
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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