Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C04
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57290| Best HMM Match : E1_dh (HMM E-Value=1.4e-05)                183   1e-46
SB_4364| Best HMM Match : E1_dh (HMM E-Value=3.1e-13)                  66   4e-11
SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)                       53   3e-07
SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)                33   0.19 
SB_1141| Best HMM Match : PA (HMM E-Value=3.3e-11)                     30   1.8  
SB_48907| Best HMM Match : Transket_pyr (HMM E-Value=0)                29   3.1  
SB_53058| Best HMM Match : Y_Y_Y (HMM E-Value=2.2)                     29   5.4  
SB_7425| Best HMM Match : MAM (HMM E-Value=0.45)                       29   5.4  
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)         28   7.2  
SB_16806| Best HMM Match : CUE (HMM E-Value=1e-07)                     28   7.2  

>SB_57290| Best HMM Match : E1_dh (HMM E-Value=1.4e-05)
          Length = 266

 Score =  183 bits (446), Expect = 1e-46
 Identities = 90/164 (54%), Positives = 112/164 (68%), Gaps = 2/164 (1%)
 Frame = +2

Query: 143 FPGA-RAPYVSEMKFFNETSYEPI-PIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQ 316
           +PGA    +  +++F +    + I P+YRVMD  G+II  + +P +   T    Y  M  
Sbjct: 50  YPGAMNCSFTEKLEFVDPMDPQGIIPVYRVMDRQGKIIIDSHDPKVTYCT----YLKMTL 105

Query: 317 LSHMDKILYESQRQGRISFYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTV 496
           L+ MD+ILYESQRQGRISFYMTNYGEE  H GSA+AL  +DL+  QYRE GV ++RG T+
Sbjct: 106 LNTMDRILYESQRQGRISFYMTNYGEEATHFGSAAALEMEDLIMGQYREAGVLMWRGFTL 165

Query: 497 TELVNQCYGNCEDPGKGRQMPVHYGSKHHNMVTISSPLGTQMPQ 628
            + +NQCY N  D GKGRQMPVHYGSK  N VTISS L TQMPQ
Sbjct: 166 ADFMNQCYANQHDAGKGRQMPVHYGSKELNFVTISSTLATQMPQ 209


>SB_4364| Best HMM Match : E1_dh (HMM E-Value=3.1e-13)
          Length = 238

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 30/49 (61%), Positives = 35/49 (71%)
 Frame = +2

Query: 614 TQMPQAVGAAYAYKRVPNNDRCVICYFGDGAASEGDAHAAFNFAATLXC 760
           TQ+PQA G+ YA+ R  N D+   CYFG+GAASEGD   A NFAATL C
Sbjct: 2   TQVPQASGSGYAF-RTANEDKVAACYFGEGAASEGDFPTALNFAATLKC 49


>SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)
          Length = 352

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
 Frame = +2

Query: 389 GEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTELVNQCYGNCEDPGKGRQMPVH- 565
           G+E   +G  +++   D V + YR  G    RG +  E++ +  G      +G+   +H 
Sbjct: 57  GQEACCVGMEASIDKNDSVITAYRCHGWTYMRGRSAREVLCELTGRKTGCTQGKGGSMHM 116

Query: 566 YGSKHHNMVTISSPLGTQMPQAVGAAYAYKRVPNNDRCVICYFGDGAASEGDAHAAFNFA 745
           YG +++    I   +G Q+P   G A A+K +  N R  +  +GDGAA++G     +N A
Sbjct: 117 YGHEYYGGNGI---VGAQVPLGAGIALAHK-LRGNGRICLTLYGDGAANQGQLFETYNMA 172

Query: 746 ATLXCP 763
                P
Sbjct: 173 KLWNLP 178


>SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)
          Length = 562

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 608 LGTQMPQAVGAAYAYKRVPNNDRCVICYFGDGAASEGDAHAAFNFAA 748
           LG  +  A G AY  K +      V C  GDG ++EG    A +FA+
Sbjct: 50  LGQGLSCACGMAYMGKHIDKASYRVFCLLGDGESAEGAVWEAMSFAS 96


>SB_1141| Best HMM Match : PA (HMM E-Value=3.3e-11)
          Length = 324

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -3

Query: 259 IFVDDLSVIIHNSINRNWLVTSFVEEFHFTHVRCSCARKFCYLTTAILCRFGPRTRRQKP 80
           +FV  +S I+   I+  WLV  +V+ F + H R    ++        + +   RT + KP
Sbjct: 210 LFVS-VSFIVLMVISLAWLVFYYVQRFRYVHARDKTEKRLSSAAKKAIAKLPTRTVK-KP 267

Query: 79  SSPSKSI 59
           SS    +
Sbjct: 268 SSTESQV 274


>SB_48907| Best HMM Match : Transket_pyr (HMM E-Value=0)
          Length = 548

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 608 LGTQMPQAVGAAYAYKRVPNNDRCVICYFGDGAASEGDAHAAFNFA 745
           LG  +  A G AY  K        V    GDG A+EG    A +FA
Sbjct: 50  LGQGLSCACGMAYTAKHFDKASYRVFTLLGDGEAAEGAVWEAMHFA 95


>SB_53058| Best HMM Match : Y_Y_Y (HMM E-Value=2.2)
          Length = 229

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 632 VGAAYAY-KRVPNNDRCVICYFGDGAASEGDAHAAFNFA 745
           VG  Y Y   VP N       +   AA +G AHA +N A
Sbjct: 17  VGDNYWYGTSVPTNTAAAATMYAKAAAKDGHAHALYNLA 55


>SB_7425| Best HMM Match : MAM (HMM E-Value=0.45)
          Length = 300

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 290 INMYKTMVQLSHMDKILYESQRQGRISFYM 379
           +N+YK  +  +H+D I +++  QGR S ++
Sbjct: 103 LNVYKAQISTAHIDMIWFKTGNQGRNSDFV 132


>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
          Length = 1414

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 446 FSQYREVGVFLYRGMTVTELV-NQCYGNCEDPGKGRQMPVHYGSKHHNMVTISSPLGTQM 622
           F   +E G+F YRG   ++ V ++C      P        +  S  HN V IS    T +
Sbjct: 613 FKTLKENGIFKYRGKRASKKVRDRCKSANIAPSNSNPTNANEPSNLHNDVNISPAPDTHI 672

Query: 623 P 625
           P
Sbjct: 673 P 673


>SB_16806| Best HMM Match : CUE (HMM E-Value=1e-07)
          Length = 322

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 572 SKHHNMVTISSPLGTQMPQAVGAAYAYKRVPNNDRCVICYFGDGAA 709
           ++H N V I     T+ P+A       + + NND C IC+   G A
Sbjct: 60  ARHRNFVRIQKCTETRFPEAT----TEELLQNNDDCAICWDNMGKA 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,661,820
Number of Sequences: 59808
Number of extensions: 493677
Number of successful extensions: 1257
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)