Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C03
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    87   9e-19
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    28   0.46 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   0.80 
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    26   1.8  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    24   5.6  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    24   5.6  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    24   7.5  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    23   9.8  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 86.6 bits (205), Expect = 9e-19
 Identities = 35/51 (68%), Positives = 42/51 (82%)
 Frame = +2

Query: 32  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
           M +HK F  K+KLAK  +QNRPIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 1   MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 27.9 bits (59), Expect = 0.46
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 196 FTSLQLELCPSPVTPLSVISNSVSCAHPYPL 104
           ++S+ L    +P TP S  +N V CA P PL
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSPL 362


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 0.80
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 166  SPVTPLSVISNSVSCAHPYPLRNGS 92
            +P TP++V S++V+ AH Y    GS
Sbjct: 982  NPYTPIAVASSTVNPAHTYKPHGGS 1006


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 154 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSC 14
           P  +I +S S  HP PL +G VL +   +   NNK  +   +   SC
Sbjct: 109 PAMLILDSKSI-HPLPLTDGEVLHRWECEVDSNNKTTIDLKYWYCSC 154


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 228 YRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIV 130
           YRVFI LHL    A   +FVL +  L  +Y I+
Sbjct: 236 YRVFIELHLNEEIA--AAFVLQKPILPLIYNIL 266


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +2

Query: 80  LKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTK 175
           +K+ +P+P+W  ++ G     +     W R K
Sbjct: 23  VKELKPLPEWKSLKFGENFTDHMLIMKWNREK 54


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 81  SFLANLRLIINXLWADILNNQVVKTKC 1
           +F   LR I++  W+D++  Q+  T C
Sbjct: 250 NFSTELRKIVSKKWSDVVPFQLPATYC 276


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 181 LELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNK 50
           +++  +  TP  +I+  +   H   L   S L + +GQ A NNK
Sbjct: 344 VDISMAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNK 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 932,797
Number of Sequences: 5004
Number of extensions: 15534
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)