Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C02
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0231 - 1698244-1700154                                           29   3.7  
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220     29   4.9  

>07_01_0231 - 1698244-1700154
          Length = 636

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 248 LGVIVTHRRTRAVPEVSRAILHLDQDCQDPEVN 346
           LG++ +H  + A P + + + +LD D Q PE+N
Sbjct: 600 LGLLCSHPFSNARPNMRQVLQYLDGDAQLPELN 632


>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
          Length = 1053

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 269 RRTRAVPEVSRAILHLDQDCQDPEVNQVIPHHGSGHQAREVSRAIL 406
           RR R  P  SR  L  ++  +  E +   PH G G   R+  R +L
Sbjct: 25  RRARTPPPPSRRSLRREEALEGVERSATSPHAGDGEGRRDGERRLL 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,371,013
Number of Sequences: 37544
Number of extensions: 221078
Number of successful extensions: 574
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)