Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_C02
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39109| Best HMM Match : PT (HMM E-Value=5) 50 2e-06
SB_28751| Best HMM Match : Cyclin_N (HMM E-Value=3.6e-05) 34 0.10
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 34 0.13
SB_45146| Best HMM Match : DUF504 (HMM E-Value=9.8) 33 0.18
SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_45000| Best HMM Match : Cuticle_2 (HMM E-Value=1.8) 33 0.31
SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_14845| Best HMM Match : DUF983 (HMM E-Value=0.015) 31 0.72
SB_18443| Best HMM Match : Phage_attach (HMM E-Value=5.3) 30 2.2
SB_19918| Best HMM Match : TGF_beta (HMM E-Value=9.6) 29 2.9
SB_50280| Best HMM Match : Marek_A (HMM E-Value=1.7) 29 3.8
SB_50256| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1) 29 5.0
SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26) 29 5.0
SB_23| Best HMM Match : ABC2_membrane (HMM E-Value=1.7) 29 5.0
SB_14338| Best HMM Match : Spore_permease (HMM E-Value=0.75) 29 5.0
>SB_39109| Best HMM Match : PT (HMM E-Value=5)
Length = 231
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/147 (17%), Positives = 62/147 (42%)
Frame = -1
Query: 724 FQILTILIQTKDXSAYFQILTIPILMKDSLVCLQILIAQILMRDSSAYFQTLIIPILMKD 545
F++ + + + YF+ + + S + + Q+ S YF++ ++ +
Sbjct: 66 FKLPVLQVASTSSREYFKSPVLQVASTSSREYFKSPVLQVASTSSREYFKSRVLQVASTS 125
Query: 544 SSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRT 365
S YF+ + + S YF+S + + ++ YF+ + + S YF S + +
Sbjct: 126 SREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQV 185
Query: 364 MMRNNLVYFRILTILIQMKDSSAYFRN 284
++ YF+ + + S YF++
Sbjct: 186 ASTSSREYFKSRVLQVASTSSREYFKS 212
Score = 49.6 bits (113), Expect = 3e-06
Identities = 26/147 (17%), Positives = 62/147 (42%)
Frame = -1
Query: 724 FQILTILIQTKDXSAYFQILTIPILMKDSLVCLQILIAQILMRDSSAYFQTLIIPILMKD 545
F+ + + + YF++ + + S + + Q+ S YF++ ++ +
Sbjct: 50 FKSPVLQVASTSSRQYFKLPVLQVASTSSREYFKSPVLQVASTSSREYFKSPVLQVASTS 109
Query: 544 SSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRT 365
S YF+ + + S YF+S + + ++ YF+ + + S YF S + +
Sbjct: 110 SREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQV 169
Query: 364 MMRNNLVYFRILTILIQMKDSSAYFRN 284
++ YF+ + + S YF++
Sbjct: 170 ASTSSREYFKSRVLQVASTSSREYFKS 196
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/140 (17%), Positives = 59/140 (42%)
Frame = -1
Query: 703 IQTKDXSAYFQILTIPILMKDSLVCLQILIAQILMRDSSAYFQTLIIPILMKDSSAYFQI 524
+ + YF+ + + S ++ + Q+ S YF++ ++ + S YF+
Sbjct: 41 VASNSSRQYFKSPVLQVASTSSRQYFKLPVLQVASTSSREYFKSPVLQVASTSSREYFKS 100
Query: 523 LTIPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLV 344
+ + S YF+S + + ++ YF+ + + S YF S + + ++
Sbjct: 101 PVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSRE 160
Query: 343 YFRILTILIQMKDSSAYFRN 284
YF+ + + S YF++
Sbjct: 161 YFKSRVLQVASTSSREYFKS 180
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/147 (17%), Positives = 61/147 (41%)
Frame = -1
Query: 724 FQILTILIQTKDXSAYFQILTIPILMKDSLVCLQILIAQILMRDSSAYFQTLIIPILMKD 545
F+ + + + YF+ + + S + + Q+ S YF++ ++ +
Sbjct: 82 FKSPVLQVASTSSREYFKSPVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTS 141
Query: 544 SSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRT 365
S YF+ + + S YF+S + + ++ YF+ + + S YF S + +
Sbjct: 142 SREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQV 201
Query: 364 MMRNNLVYFRILTILIQMKDSSAYFRN 284
++ YF+ + + S YF++
Sbjct: 202 ASTSSREYFKSRVLQVASTSSREYFKS 228
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/111 (19%), Positives = 50/111 (45%)
Frame = -1
Query: 616 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 437
+ Q+ S YF++ ++ + S YF++ + + S YF+S + + ++ Y
Sbjct: 38 VLQVASNSSRQYFKSPVLQVASTSSRQYFKLPVLQVASTSSREYFKSPVLQVASTSSREY 97
Query: 436 FRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQMKDSSAYFRN 284
F+ + + S YF S + + ++ YF+ + + S YF++
Sbjct: 98 FKSPVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKS 148
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/111 (18%), Positives = 48/111 (43%)
Frame = -1
Query: 616 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 437
+ Q+ S Y ++ ++ + S Y + + + S YF+S + + ++ Y
Sbjct: 6 VLQVASTPSRQYSKSPVLQVASTPSRQYSKSPVLQVASNSSRQYFKSPVLQVASTSSRQY 65
Query: 436 FRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQMKDSSAYFRN 284
F++ + + S YF S + + ++ YF+ + + S YF++
Sbjct: 66 FKLPVLQVASTSSREYFKSPVLQVASTSSREYFKSPVLQVASTSSREYFKS 116
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/111 (18%), Positives = 47/111 (42%)
Frame = -1
Query: 616 IAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVY 437
+ Q+ S Y ++ ++ + S YF+ + + S YF+ + + ++ Y
Sbjct: 22 VLQVASTPSRQYSKSPVLQVASNSSRQYFKSPVLQVASTSSRQYFKLPVLQVASTSSREY 81
Query: 436 FRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQMKDSSAYFRN 284
F+ + + S YF S + + ++ YF+ + + S YF++
Sbjct: 82 FKSPVLQVASTSSREYFKSPVLQVASTSSREYFKSRVLQVASTSSREYFKS 132
>SB_28751| Best HMM Match : Cyclin_N (HMM E-Value=3.6e-05)
Length = 223
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 329 QDPEVNQVIPHHGSGHQAREVSRAILHLDQDCQDPEVNQVILHHGSGHQALEVNRAILH 505
+D + Q +P GSG++ ++ +L + + D E + L H S H+A +VN + H
Sbjct: 165 EDGRLIQTVP--GSGYKYEDLRPCLLRMSEVLLDLENMECKLRHASNHEAADVNDQLTH 221
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 33.9 bits (74), Expect = 0.13
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Frame = +2
Query: 215 VIVTHRRTRAVL---GVIVTHRRTRAVPEVSRAILHLDQDCQDPEVNQVIPH-HGSGHQA 382
+I TH + A+ +I TH + A+ R ++H + I H H H A
Sbjct: 329 IIRTHSHSHALSFTHTLIHTHSHSHALSFTPRTVIHTHSHPHALSFTRTIIHTHSHSHHA 388
Query: 383 REVSRAILHLDQDCQDPEVNQVILHHGSGHQALEVNRAILHQY 511
+ ++H ++H S AL R I+H +
Sbjct: 389 LSFTCTLIHTHSHSLALSFTSTLIHTHSHSHALSFTRTIIHMH 431
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Frame = +2
Query: 350 VIPHHGSGHQAREVSRAILHLDQDCQDPEVNQVILH-HGSGHQALEVNRAILHQYRDCQD 526
+I H H R ++H + I+H H H AL ++H +
Sbjct: 345 LIHTHSHSHALSFTPRTVIHTHSHPHALSFTRTIIHTHSHSHHALSFTCTLIHTHSHSLA 404
Query: 527 LEVSRAILHQYRDYQGLEVSRAIPH 601
L + ++H + L +R I H
Sbjct: 405 LSFTSTLIHTHSHSHALSFTRTIIH 429
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +2
Query: 380 AREVSRAILHLDQDCQDPEVNQVILHHGSGHQALEVNRAILHQYRDCQDLEVSRAILH 553
A +R I+H + ++H S AL R ++H + L +R I+H
Sbjct: 237 ALSFTRTIIHTHSPSHTLSFTRTLIHTHSHSHALLFTRTLIHTHSHPHSLLFTRTIIH 294
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +2
Query: 443 QVILHHGSGHQALEVNRAILHQYRDCQDLEVSRAILHQYRDYQGLEVSRAIPHQDL 610
+ I+H S L R ++H + L +R ++H + L +R I H L
Sbjct: 242 RTIIHTHSPSHTLSFTRTLIHTHSHSHALLFTRTLIHTHSHPHSLLFTRTIIHTTL 297
>SB_45146| Best HMM Match : DUF504 (HMM E-Value=9.8)
Length = 273
Score = 33.5 bits (73), Expect = 0.18
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +2
Query: 434 EVNQVILHHG-SGHQALEVNRAI-LHQYRDCQDLEVSRAI-LHQYRDYQGLEVSRAIPHQ 604
EV +V+ G +++ EV R L YR+ + E++R L YR Y+G EV R + +
Sbjct: 82 EVMRVLKLRGYRSYESTEVTRVQKLRGYRNYEGTEITRVQKLRGYRSYEGTEVPRVLKLR 141
Query: 605 DLGYQDL*ANQAI--LHQYRDCQDLEVSR 685
GY+ + + L YR + EV+R
Sbjct: 142 --GYRSYESTEVTRKLRGYRSYESTEVTR 168
Score = 31.1 bits (67), Expect = 0.95
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Frame = +2
Query: 374 HQAREVSRAI-LHLDQDCQDPEVNQVILHHG-SGHQALEVNRAI-LHQYRDCQD-LEVSR 541
+++ EV+R + L + + EV +V+ G ++ E+ R L YR+ ++ + V +
Sbjct: 12 YESTEVTRVLKLRGYKSYESTEVTRVLKLRGYRSYEGTEITRVQKLRGYRNYEEFMRVQK 71
Query: 542 AILHQYRDYQGLEVSRAIPHQDLGYQDL*ANQAI----LHQYRDCQDLEVSR 685
L +YR Y+G EV R + + GY+ + + L YR+ + E++R
Sbjct: 72 --LREYRSYEGTEVMRVLKLR--GYRSYESTEVTRVQKLRGYRNYEGTEITR 119
Score = 29.9 bits (64), Expect = 2.2
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Frame = +2
Query: 374 HQAREVSRAI-LHLDQDCQDPEVNQVILHHGSGHQALEVNRAI-LHQYRDCQDLEVSRAI 547
++ EV R + L + + EV + + + S +++ EV R L R EV+R
Sbjct: 129 YEGTEVPRVLKLRGYRSYESTEVTRKLRGYRS-YESTEVTRVQKLRGNRSYAGTEVTRVQ 187
Query: 548 -LHQYRDYQGLEVSRAIPHQDL-GYQDL*ANQAI----LHQYRDCQDLEVSRXILRLDQD 709
L +YR Y+G EV+R Q L GY+ + + L +YR + EV+R R +
Sbjct: 188 KLREYRSYEGTEVTR---EQKLRGYRSYESTEVTRVQKLQEYRSYKSTEVTRNFGRRKNN 244
Query: 710 CQ-DLE 724
+ DLE
Sbjct: 245 LRVDLE 250
>SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 33.5 bits (73), Expect = 0.18
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Frame = -1
Query: 427 LTILIQMKDSSAYFPSL-MTRTMMRNNLVYFRIL---TILIQMKDSSAYFRNCSSTTVSN 260
+T Q SS Y MT N+ Y+ ++ T Q S+ Y+ T+ +
Sbjct: 291 MTSYAQYNSSSDYHLMYHMTSYAQYNSSSYYYLMYHMTSYAQYNSSNDYYLMYHMTSYAQ 350
Query: 259 YDSQNCSSTT--VSNYDSHNYSKMAYNLTLSHNSFHRMRNSFHYYRIYDIAQYMH*NT 92
Y+S + +++Y +N S Y+L S+ R +S +YY +Y + Y N+
Sbjct: 351 YNSSSYYHLMYHMTSYAQYN-SSSDYHLMYHMTSYARFNSSSYYYLMYHMTSYAQYNS 407
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = -1
Query: 331 LTILIQMKDSSAYFRNCSSTTVSNYDSQNCSSTT--VSNYDSHNYSKMAYNLTLSHNSFH 158
+T Q SS Y+ T+ + Y+S + +++Y +N S Y+L S+
Sbjct: 147 MTSYAQYNSSSYYYLMYHMTSYAQYNSSSDYYLMYHMTSYAQYN-SSSDYHLMYHMTSYA 205
Query: 157 RMRNSFHYYRIYDIAQYMH*NT 92
+ +S YY +Y + Y N+
Sbjct: 206 QYNSSSDYYLMYHMTSYAQYNS 227
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -1
Query: 331 LTILIQMKDSSAYFRNCSSTTVSNYDSQNCSSTT--VSNYDSHNYSKMAYNLTLSHNSFH 158
+T Q SS Y T+ + Y+S + +++Y +N S Y+L S+
Sbjct: 219 MTSYAQYNSSSYYHLMYHMTSYAQYNSSSDYYLMYHMTSYAQYN-SSSDYHLMYHMTSYA 277
Query: 157 RMRNSFHYYRIYDIAQYMH*NT 92
R +S YY +Y + Y N+
Sbjct: 278 RYNSSSDYYLMYHMTSYAQYNS 299
>SB_45000| Best HMM Match : Cuticle_2 (HMM E-Value=1.8)
Length = 218
Score = 32.7 bits (71), Expect = 0.31
Identities = 20/82 (24%), Positives = 34/82 (41%)
Frame = +3
Query: 477 LWK*TELSFINIGIVRIWK*AELSFINIGIIRVWK*AELSLIRIWAIRICKQTKLSFINI 656
+W + L + GI +W + L + GI VW + L R + + L +
Sbjct: 81 VWYKSGLVYERFGIRAVWYTSGLVYERFGIRAVWYTSGLVYERFGIRAVWYTSGLVYERF 140
Query: 657 GIVRIWK*AXLSFVWIRIVRIW 722
GI +W + L + W I +W
Sbjct: 141 GIRAVWYTSGLVYEWFGIRAVW 162
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = +3
Query: 477 LWK*TELSFINIGIVRIWK*AELSFINIGIIRVWK*AELSLIRIWAIRICKQTKLSFINI 656
+W + L + GI +W + L + GI VW + L R + ++ L +
Sbjct: 33 VWYTSGLVYERFGIRAVWYTSGLVYERFGIRAVWYTSGLVYERFGIQAVWYKSGLVYERF 92
Query: 657 GIVRIWK*AXLSFVWIRIVRIW 722
GI +W + L + I +W
Sbjct: 93 GIRAVWYTSGLVYERFGIRAVW 114
>SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 31.9 bits (69), Expect = 0.54
Identities = 25/146 (17%), Positives = 60/146 (41%), Gaps = 1/146 (0%)
Frame = -1
Query: 679 YFQILTIPILMKDSLVCLQILIAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMK 500
Y Q ++ P L S L+ + + + Y Q++ +P L S + + L P+ +
Sbjct: 38 YIQSISEPPLTTSSPSQYHPLLHPVHLSTTPYYIQSISVPPLTTSSPSQYHPLLHPVHLS 97
Query: 499 DSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTIL 320
Y QS+ + ++ + L + + Y S+ ++ ++ + L
Sbjct: 98 TIPYYIQSISVPPLTTSSPSQYHPLLHPVHLSTIPYYIQSISVPSLTTSSPSQYHPLPHP 157
Query: 319 IQMKDSSAYFRNCSSTTVSNYD-SQN 245
+ ++ + Y ++ S ++ + SQN
Sbjct: 158 VHLRTTLFYIQSISEPPLTTFSPSQN 183
>SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 31.9 bits (69), Expect = 0.54
Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 5/146 (3%)
Frame = -1
Query: 712 TILIQTKDXSAYFQILTIPILMKDSLVCLQILIAQILMRDSSAYFQTLIIPILMKDSSAY 533
T+L+QT + I IP+L + +L++ Y I L+ +S Y
Sbjct: 277 TLLLQTSRYYRHPPITDIPLLQTPCYYRHPAITDTLLLQTPCYYRHPAITDTLLLQTSRY 336
Query: 532 FQ--ILTIPILMKDSSVYFQSLMTRTMMKNNLVYFR---ILTILIQMKDSSAYFPSLMTR 368
++ +T +L++ Y +T T++ Y+R I I + ++ S Y +T
Sbjct: 337 YRHPAITDTLLLQTPCYYRHLAITDTLLLQTPCYYRHPTITDIPLLLQTSRYYRHPAITD 396
Query: 367 TMMRNNLVYFRILTILIQMKDSSAYF 290
++ Y+R I + ++Y+
Sbjct: 397 ILLLQTPCYYRHPAITDTLLLQTSYY 422
>SB_14845| Best HMM Match : DUF983 (HMM E-Value=0.015)
Length = 254
Score = 31.5 bits (68), Expect = 0.72
Identities = 22/120 (18%), Positives = 56/120 (46%)
Frame = -1
Query: 670 ILTIPILMKDSLVCLQILIAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSS 491
I+T+ ++MK ++ + +++ I+M + T+I+ + M + + + I+M +
Sbjct: 131 IMTLAMMMKTLIITVAMIMMTIVMT-LAMLMMTIIMTVAMIMTIIMTVAMIMIIIMTVAM 189
Query: 490 VYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQM 311
+ +MT M+ + + I++ M +MT+ M ++ I+T+ + M
Sbjct: 190 IMMTIIMTVAMLMMTKILTLAMMIMMMMTKIMTLAMMMMTKIMTLAMMMMTIIMTLAMMM 249
>SB_18443| Best HMM Match : Phage_attach (HMM E-Value=5.3)
Length = 194
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 470 HQALEVNRAI-LHQYRDCQDLEVSRAILHQ-YRDYQGLEVSRA 592
+++ EV RA L YR + EV+R + YR Y+G EV+RA
Sbjct: 11 YESTEVTRAQKLRGYRSYEGTEVTRVQKSRGYRSYEGTEVTRA 53
>SB_19918| Best HMM Match : TGF_beta (HMM E-Value=9.6)
Length = 353
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 289 RNCSSTTVSNYDSQNCSSTTVSNYDSHNYSKMAY 188
R C S +S Y+S C S +S Y+ + AY
Sbjct: 64 RECQSVELSAYESVKCQSVELSAYECQSVELFAY 97
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 289 RNCSSTTVSNYDSQNCSSTTVSNYDSHNYSKMAY 188
R C S +S Y+S C S +S Y+ + AY
Sbjct: 161 RECQSVELSAYESVKCQSVELSAYECQSVELSAY 194
>SB_50280| Best HMM Match : Marek_A (HMM E-Value=1.7)
Length = 573
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +3
Query: 261 LLTVVLEQFRK*AELSFIWIRIVRIRK*TKL---FLIMVRVIKLGK*AELSFIWIRIVRI 431
+L V+ Q K L ++ +V+IR + L + +MV++ L L F+ ++I +
Sbjct: 445 ILVVINRQAPKTCPLEALYFVMVKIRILSPLEALYFVMVKIRVLSPLEALYFVMVKIRVL 504
Query: 432 RK*TKLFFIMVRVIKLWK*TELSFINI 512
L+F+MV++ L L F+ +
Sbjct: 505 SPLEALYFVMVKIRVLSPLEALYFVMV 531
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -1
Query: 583 YFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMK 404
YF + I IL + YF ++ I +L ++YF + R + +YF ++ I +
Sbjct: 463 YFVMVKIRILSPLEALYFVMVKIRVLSPLEALYFVMVKIRVLSPLEALYFVMVKIRVLSP 522
Query: 403 DSSAYF 386
+ YF
Sbjct: 523 LEALYF 528
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = -1
Query: 535 YFQILTIPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMR 356
YF ++ I IL ++YF + R + +YF ++ I + + YF + R +
Sbjct: 463 YFVMVKIRILSPLEALYFVMVKIRVLSPLEALYFVMVKIRVLSPLEALYFVMVKIRVLSP 522
Query: 355 NNLVYF 338
+YF
Sbjct: 523 LEALYF 528
>SB_50256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 29.1 bits (62), Expect = 3.8
Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Frame = -1
Query: 640 SLVCLQILIAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSLMTRT 461
SL C++ L Q ++ Y QT ++ ++ Y Q T ++ ++VY + RT
Sbjct: 90 SLTCIKRLPVQY----TTVYSQTCTKRPPVQYTTVYSQTCTKRPPVQHTTVYSHTCTKRT 145
Query: 460 MMKNNLVYFRILTILIQMKDSSAYFPSLMTR-----TMMRNNLVYFRILTILIQMKDSSA 296
++ +VY++ T ++ + Y + R TM+ +++ T+++ M S
Sbjct: 146 PVQYTMVYWQTCTKRPPVQYTMVYSQTCTKRPPVQYTMVNIQSSTYKMTTVMVVMTHRSV 205
Query: 295 YFRNCSSTTVSNYDSQNCSSTTV 227
R + + D + S+T V
Sbjct: 206 QTRAVAQENTTWQDEDSYSNTGV 228
>SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = -1
Query: 352 NLVYFRILTILIQMKDSSAYFRNCSSTTVSNYDSQNCSSTTVSNYDSHNYSKMAYNLTLS 173
NL+Y ++ + +SA C +S D QNC + SK AY
Sbjct: 536 NLLYIYPQSVNFSSRGTSARNIACKVQIMSGEDEQNCIECIFGKSSCASMSKEAYTHVTY 595
Query: 172 HN 167
HN
Sbjct: 596 HN 597
>SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1)
Length = 633
Score = 28.7 bits (61), Expect = 5.0
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Frame = -1
Query: 478 SLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQMKDSS 299
SL+TRT+ K +LT ++ ++S SL+TRT+ + N + +LT + ++S
Sbjct: 177 SLLTRTLRKYKTS--SLLTRTLRKHNTS----SLLTRTLRKYNTSF--LLTRTSRKYNTS 228
Query: 298 AYF------RNCSSTTVSNYDSQNCSSTTVSNYDSHNYSKMAYNLTLSHNSFHRMRNSFH 137
+ N SS N SS + HN S + HN+ + +
Sbjct: 229 SLLTRALRKHNTSSLLTRTLRKYNTSSLLTRTFRKHNTSSLLTRTMRKHNTSSLLTRTLR 288
Query: 136 YY 131
Y
Sbjct: 289 KY 290
>SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)
Length = 589
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = -1
Query: 367 TMMRNNLVYFRILTI-LIQMK-DSSAYFRNCSSTTVSNYDSQNCSSTTVSNYDSHNYSKM 194
T++R+ L Y ++ I +I M SS+ + SS++ S+ +Q + + S+ +H + +
Sbjct: 447 TIIRHYLHYVVVINIFIIDMSISSSSSSSSSSSSSSSSTGAQLLTPSKPSSNHNHYHRRR 506
Query: 193 AYNLTLSHNSFHRMRNS 143
++ HN HR +++
Sbjct: 507 HHHRNYRHNHHHRHQHN 523
>SB_23| Best HMM Match : ABC2_membrane (HMM E-Value=1.7)
Length = 231
Score = 28.7 bits (61), Expect = 5.0
Identities = 35/106 (33%), Positives = 44/106 (41%)
Frame = +3
Query: 402 SFIWIRIVRIRK*TKLFFIMVRVIKLWK*TELSFINIGIVRIWK*AELSFINIGIIRVWK 581
SFI I I I T FI++ ++ + S I I I I + SFI I I +
Sbjct: 79 SFIVIAIASIIVITIASFIVIAIVSIIVIAIASIIVISIASIIVISIASFIVIAIASIIV 138
Query: 582 *AELSLIRIWAIRICKQTKLSFINIGIVRIWK*AXLSFVWIRIVRI 719
A S+I I I SFI I I I A S + I I I
Sbjct: 139 IAIASIIVIAIASIIHYCYCSFIVIVIASIIVIAIASVIVIAIASI 184
>SB_14338| Best HMM Match : Spore_permease (HMM E-Value=0.75)
Length = 367
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/123 (17%), Positives = 63/123 (51%)
Frame = +3
Query: 345 TKLFLIMVRVIKLGK*AELSFIWIRIVRIRK*TKLFFIMVRVIKLWK*TELSFINIGIVR 524
T + + ++ +I + + ++S + I+ + + T + ++ +I + + T++S + I+
Sbjct: 32 TNVSVCILSIIIVCRITKVSVCILSIIIVCRLTNVSVCILSIIIVCRLTKVSVSILSIII 91
Query: 525 IWK*AELSFINIGIIRVWK*AELSLIRIWAIRICKQTKLSFINIGIVRIWK*AXLSFVWI 704
+ + +S + I V + +S+ + I +C+ TK+S + I+ + + + +S +
Sbjct: 92 VCRLTNVSVCILSTIIVCRLTNVSVCILSIIIVCRLTKMSVSILSIIIVCRLSNVSVCIL 151
Query: 705 RIV 713
I+
Sbjct: 152 SII 154
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,567,937
Number of Sequences: 59808
Number of extensions: 274230
Number of successful extensions: 899
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -