Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_C02
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    32   0.48 
AF039718-4|AAP68906.2|  696|Caenorhabditis elegans Prion-like-(q...    32   0.48 
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    29   3.4  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   5.9  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   5.9  

>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -1

Query: 322 LIQMKDSSAYFRNCSSTTVSNYD-----SQNCSSTTVSNYDSHNYSKMAYN 185
           L+Q      Y+ +  STT  NYD     S N + TT SNY++ N S+   N
Sbjct: 396 LLQNTPQPYYYGSSVSTTPRNYDEMSTASSNSTHTTTSNYNNRNGSRNGGN 446


>AF039718-4|AAP68906.2|  696|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform b protein.
          Length = 696

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -1

Query: 322 LIQMKDSSAYFRNCSSTTVSNYD-----SQNCSSTTVSNYDSHNYSKMAYN 185
           L+Q      Y+ +  STT  NYD     S N + TT SNY++ N S+   N
Sbjct: 298 LLQNTPQPYYYGSSVSTTPRNYDEMSTASSNSTHTTTSNYNNRNGSRNGGN 348


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 262  NYDSQNCSSTTVSNYDSHNYSKMAYNLTLSHNSFHRMRNSFHYY 131
            N  + + SS++ +++ SHNYS   YN+ L  N +      F ++
Sbjct: 1313 NMSTSHQSSSSNNHHYSHNYSYPHYNIQLPQNQYQSWTPQFDFH 1356


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -1

Query: 334 ILTILIQMKDSSAYFRNCSSTTVSNYDSQNCSSTTVSNYDSHNYSKMAYNLTLSHNSFHR 155
           +L + + +   S   + C S  +SN  SQ+C+S T+   +         +L+LS+NS  R
Sbjct: 6   LLLLFLPIISCSNAPKTCKSFWISNRPSQDCASLTLQ--EPPQLLPNVLSLSLSNNSIFR 63

Query: 154 MRNSFHYYR 128
           +      YR
Sbjct: 64  ITTFPSEYR 72


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 290 EVSRAILHLDQDCQDPEVNQVIPHH 364
           E   A+LHL Q+   PE+N V+  H
Sbjct: 184 EAEAALLHLQQNIDIPEINLVVNQH 208



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 386 EVSRAILHLDQDCQDPEVNQVILHH 460
           E   A+LHL Q+   PE+N V+  H
Sbjct: 184 EAEAALLHLQQNIDIPEINLVVNQH 208


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 290 EVSRAILHLDQDCQDPEVNQVIPHH 364
           E   A+LHL Q+   PE+N V+  H
Sbjct: 184 EAEAALLHLQQNIDIPEINLVVNQH 208



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 386 EVSRAILHLDQDCQDPEVNQVILHH 460
           E   A+LHL Q+   PE+N V+  H
Sbjct: 184 EAEAALLHLQQNIDIPEINLVVNQH 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,859,482
Number of Sequences: 27780
Number of extensions: 196474
Number of successful extensions: 675
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)