Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_B18
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 92 1e-19
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 76 6e-15
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 56 5e-09
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 40 6e-04
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 31 0.28
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 27 2.6
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 27 2.6
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 27 2.6
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 91.9 bits (218), Expect = 1e-19
Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 4/159 (2%)
Frame = +3
Query: 390 SDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKP 569
SD+ K A + I +A G H +A+ G+ ++WG+ QLG + + +
Sbjct: 211 SDSQKRTAEPTQMRLPEICQLATGTDHIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQG 270
Query: 570 KFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLGTISNKE----MSPQHI 737
+ LA KN+I V G+YHS A+ N G +Y+WG N QCG+ +E P +
Sbjct: 271 LTPQPLALKNIISVGAGSYHSFAIDNKGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLV 330
Query: 738 SSLIGVPIALIACGNNHTFVLSKSGAVFGWGKNTHGXLG 854
+L G + I G +HT L + G V WG++ LG
Sbjct: 331 DALEGYNVKSITGGEHHTLALLEDGRVLAWGRDDRHQLG 369
Score = 89.4 bits (212), Expect = 6e-19
Identities = 66/226 (29%), Positives = 103/226 (45%), Gaps = 18/226 (7%)
Frame = +3
Query: 171 KMFCWGNATHHEL---CIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHL 341
K++ WGN +L ++ ++ L +P K +I +V AG +HS + N G +
Sbjct: 246 KVYTWGNGQQFQLGRRMLERRRLQGLTPQPLALK-----NIISVGAGSYHSFAIDNKGRV 300
Query: 342 YSCGNNDVGQLGRQTESDNG----KNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSW 509
Y+ G N Q G + E + P LV+ + + +I G H+LA+ E G+ +W
Sbjct: 301 YAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKSITGGEHHTLALLEDGRVLAW 360
Query: 510 GSDSMGQLGNNLGAHAQDKPKFVKG----LATK-------NVIQVACGAYHSVALTNSGD 656
G D QLG A + K KG L+T NVIQV CG +H++A+T+ G
Sbjct: 361 GRDDRHQLGIPDNALPETVVKDEKGNNYYLSTPTIIPGLTNVIQVVCGTHHNLAVTSDGK 420
Query: 657 LYSWGANSYGQCGLGTISNKEMSPQHISSLIGVPIALIACGNNHTF 794
+YSWG+ + G G P + S +A+ G F
Sbjct: 421 VYSWGSAENYEVGQGDNDEDVAVPTLVRSKAIKEVAIRVAGAGGQF 466
Score = 83.8 bits (198), Expect = 3e-17
Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 17/238 (7%)
Frame = +3
Query: 174 MFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAV--AAGEFHSLYLSNSGHLYS 347
++ +G+ + +EL + G + D+V +P L+ +D + V A G HS LS+ G +Y+
Sbjct: 73 VYVFGSGSMNELGM-GEEEMDVVYRPRLNPILSTDKVGVVDLAVGGMHSAALSHDGRVYT 131
Query: 348 CGNNDVGQLGRQTESDNGKN------------PALVE-TFKDCTISTIACGLQHSLAIDE 488
G ND LGR T+ +N P+ VE ++ + C + AI +
Sbjct: 132 WGVNDDYALGRLTKDQKDENGDKVDNDLLEGTPSKVEGALSHLRVTKVICSDNLTAAITD 191
Query: 489 WGQPFSWGSD--SMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLY 662
G F+WG+ S G LG + +P ++ + Q+A G H +ALT +G +Y
Sbjct: 192 NGCCFTWGTFRCSDGVLGYSDSQKRTAEPTQMR---LPEICQLATGTDHIIALTTTGKVY 248
Query: 663 SWGANSYGQCGLGTISNKEMSPQHISSLIGVPIALIACGNNHTFVLSKSGAVFGWGKN 836
+WG Q G + + + L I + G+ H+F + G V+ WG N
Sbjct: 249 TWGNGQQFQLGRRMLERRRLQGLTPQPLALKNIISVGAGSYHSFAIDNKGRVYAWGLN 306
Score = 78.2 bits (184), Expect = 1e-15
Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 15/241 (6%)
Frame = +3
Query: 177 FCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGN 356
F WG + + S +PT + E I +A G H + L+ +G +Y+ GN
Sbjct: 196 FTWGTFRCSDGVLGYSDSQKRTAEPTQMRLPE---ICQLATGTDHIIALTTTGKVYTWGN 252
Query: 357 NDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLG 536
QLGR+ + I ++ G HS AID G+ ++WG + Q G
Sbjct: 253 GQQFQLGRRMLERRRLQGLTPQPLALKNIISVGAGSYHSFAIDNKGRVYAWGLNITRQCG 312
Query: 537 NNLGAHAQD----KPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLG- 701
+ + KP V L NV + G +H++AL G + +WG + Q G+
Sbjct: 313 IEVEDEEEGAVITKPTLVDALEGYNVKSITGGEHHTLALLEDGRVLAWGRDDRHQLGIPD 372
Query: 702 ------TISNKEMSPQHISSLIGVP----IALIACGNNHTFVLSKSGAVFGWGKNTHGXL 851
+ +++ + ++S+ +P + + CG +H ++ G V+ WG + +
Sbjct: 373 NALPETVVKDEKGNNYYLSTPTIIPGLTNVIQVVCGTHHNLAVTSDGKVYSWGSAENYEV 432
Query: 852 G 854
G
Sbjct: 433 G 433
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 76.2 bits (179), Expect = 6e-15
Identities = 55/200 (27%), Positives = 97/200 (48%), Gaps = 7/200 (3%)
Frame = +3
Query: 249 PTLSKWKESDHIQAVAAGEFHSLYLSN--SGHLYSCGNNDVGQLGRQTESDNGKNPALVE 422
PT + D I V A +FHS+ L++ S ++Y CG G++G T+ P
Sbjct: 186 PTSGQLFSRDKILDVQASKFHSVVLTDEPSQNVYVCGIGAGGRIGFNTDVQYNFIPIPGI 245
Query: 423 TFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQD-----KPKFVKGL 587
K + I+ HSLA+ ++G +SWG + G+LG + +D P+ +
Sbjct: 246 IHK---VIQISVSHTHSLALTKFGSIYSWGKNGSGELGLSNDELKKDDPIQITPRRISAF 302
Query: 588 ATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLGTISNKEMSPQHISSLIGVPIAL 767
+I +A G +SVA T++ D+YSWG N+ GQ G+ + +P+ ++ L+ P+
Sbjct: 303 KDYQIIGMAAGKSYSVAWTDT-DIYSWGLNN-GQLGISDHISVVSTPRRVAGLLS-PVIH 359
Query: 768 IACGNNHTFVLSKSGAVFGW 827
C T L ++ ++ +
Sbjct: 360 AVCTTRATICLLQNNSIIAF 379
Score = 55.6 bits (128), Expect = 8e-09
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
Frame = +3
Query: 402 KNPALVETFKDCTISTIACGLQHSLAI-DEWGQP-FSWGSDSMGQLGNNLGAHAQDKPKF 575
++P + F I + HS+ + DE Q + G + G++G N P
Sbjct: 184 ESPTSGQLFSRDKILDVQASKFHSVVLTDEPSQNVYVCGIGAGGRIGFNTDVQYNFIP-- 241
Query: 576 VKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLGTISNK-----EMSPQHIS 740
+ G+ K VIQ++ HS+ALT G +YSWG N G+ GL K +++P+ IS
Sbjct: 242 IPGIIHK-VIQISVSHTHSLALTKFGSIYSWGKNGSGELGLSNDELKKDDPIQITPRRIS 300
Query: 741 SLIGVPIALIACGNNHTFVLSKSGAVFGWGKNTHGXLG 854
+ I +A G +++ + + ++ WG N +G LG
Sbjct: 301 AFKDYQIIGMAAGKSYSVAWTDTD-IYSWGLN-NGQLG 336
Score = 49.6 bits (113), Expect = 6e-07
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 8/185 (4%)
Frame = +3
Query: 291 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKN-----PALVETFKDCTISTIA 455
++ HSL L+ G +YS G N G+LG + + P + FKD I +A
Sbjct: 252 ISVSHTHSLALTKFGSIYSWGKNGSGELGLSNDELKKDDPIQITPRRISAFKDYQIIGMA 311
Query: 456 CGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSV 635
G +S+A + +SWG ++ GQLG + P+ V GL + VI C ++
Sbjct: 312 AGKSYSVAWTD-TDIYSWGLNN-GQLGISDHISVVSTPRRVAGLLSP-VIHAVCTTRATI 368
Query: 636 ALTNSGDLYSWGANSYGQCGLG---TISNKEMSPQHISSLIGVPIALIACGNNHTFVLSK 806
L + + ++ +Y Q L + +H SL + + N VL++
Sbjct: 369 CLLQNNSIIAF--CNYNQVKLPFNVDFGSSLKVTKHPLSLTRFNVRKLLASENKLAVLTE 426
Query: 807 SGAVF 821
G V+
Sbjct: 427 LGEVY 431
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 56.4 bits (130), Expect = 5e-09
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 8/191 (4%)
Frame = +3
Query: 282 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESD--NGKNPALVETFKDCTIST-- 449
I+ ++ G H+L L L++CG+N GQ G + + N +P + F +
Sbjct: 33 IEKISCGGNHTLLLDEDSQLWACGDNRKGQCGYEVKEPLYNPLSPDYLRIFTRVSHERWV 92
Query: 450 -IACGLQHSLAID-EWGQPFSWGSDSMGQLGNNLGAHAQDKPKF-VKGLATKN-VIQVAC 617
+ CG + S+ + + + S G G+LG +++Q + + L K +I ++
Sbjct: 93 FLTCGWEFSVIVHADRRRVCSCGEGLSGELGQGNRSNSQGLREIDIPYLDDKEFIIDISA 152
Query: 618 GAYHSVALTNSGDLYSWGANSYGQCGLGTISNKEMSPQHISSLIGVPIALIACGNNHTFV 797
G H + +TN G+LY G GQ LG + K ++ I A++ CG + V
Sbjct: 153 GLRHWICVTNEGNLYGCGDGRKGQ--LGPVVMKTVNKVSFLGRIEHAQAVV-CGVQFSAV 209
Query: 798 LSKSGAVFGWG 830
L ++G V G
Sbjct: 210 LQETGHVIVLG 220
Score = 45.2 bits (102), Expect = 1e-05
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 8/180 (4%)
Frame = +3
Query: 339 LYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSD 518
L S G+N QLG + D +P +V D I I+CG H+L +DE Q ++ G +
Sbjct: 2 LLSLGSNGNFQLGLNNDEDV-YSPQIVPF--DRAIEKISCGGNHTLLLDEDSQLWACGDN 58
Query: 519 SMGQLGNNL-----GAHAQDKPKFVKGLATKNVIQVACGAYHSVAL-TNSGDLYSWGANS 680
GQ G + + D + ++ + + + CG SV + + + S G
Sbjct: 59 RKGQCGYEVKEPLYNPLSPDYLRIFTRVSHERWVFLTCGWEFSVIVHADRRRVCSCGEGL 118
Query: 681 YGQCGLGTISNKE-MSPQHISSLIGVPIAL-IACGNNHTFVLSKSGAVFGWGKNTHGXLG 854
G+ G G SN + + I L + I+ G H ++ G ++G G G LG
Sbjct: 119 SGELGQGNRSNSQGLREIDIPYLDDKEFIIDISAGLRHWICVTNEGNLYGCGDGRKGQLG 178
Score = 42.3 bits (95), Expect = 8e-05
Identities = 44/192 (22%), Positives = 76/192 (39%)
Frame = +3
Query: 270 ESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTIST 449
+ + I ++AG H + ++N G+LY CG+ GQLG K L
Sbjct: 143 DKEFIIDISAGLRHWICVTNEGNLYGCGDGRKGQLGPVVMKTVNKVSFLGRIEH---AQA 199
Query: 450 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 629
+ CG+Q S + E G G + N+ A D + + ++ ++
Sbjct: 200 VVCGVQFSAVLQETGHVIVLGGEKW-----NVAAEC-DAWQANNSELSSSICSISANWST 253
Query: 630 SVALTNSGDLYSWGANSYGQCGLGTISNKEMSPQHISSLIGVPIALIACGNNHTFVLSKS 809
L+ G +Y ++G+C ++ + S I IA G H + +K
Sbjct: 254 LSLLSTEGCVY-----AFGRCDRAQKAHTKAS----------DIVQIASGTEHNILRTKK 298
Query: 810 GAVFGWGKNTHG 845
G+V +G N HG
Sbjct: 299 GSVLIYGWNEHG 310
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 39.5 bits (88), Expect = 6e-04
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 492 GQPFSWGSDSMGQLGN--NLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYS 665
G +SWG LG N + +D+P + G ++ IQV G Y L +G+LY
Sbjct: 78 GYAYSWGQQIRNYLGRVVNTNQYPRDRPGALTGKDVRSTIQVQVGGYGMYLLNENGNLYV 137
Query: 666 WGA-NSYG 686
G N+ G
Sbjct: 138 TGVPNNVG 145
Score = 32.7 bits (71), Expect = 0.068
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 531 LGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGAN-SYGQC-GLGT 704
+G+ D P L + + Q+A G +H + LT+ ++SWG Y C GLG+
Sbjct: 316 MGHANTKQVDDDPVIHDFLQNRGIKQLAHGDHHHLYLTSDHSIWSWGVELRYCGCLGLGS 375
Query: 705 ISNKEMS 725
+ +E +
Sbjct: 376 LHLQEQT 382
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 30.7 bits (66), Expect = 0.28
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 579 KGLATKNVIQVACGAY-HSVALTNSGDLYSWGANSYGQCGLGTISNKEMSPQHISSLIGV 755
KGL+ K++I CGA+ H L ++ + Y G NS TI+N +S L
Sbjct: 230 KGLSGKDIIVSLCGAFNHDEVLNHAIEFYGEGLNSLSIESRLTIANMTTEWGALSGLFPT 289
Query: 756 PIALIA 773
L+A
Sbjct: 290 DEKLLA 295
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 267 KESDHIQAVAAGEFHSLYLSNSGHL-YSCGNND 362
KE HI V G S + +GHL Y CG D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGID 35
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 267 KESDHIQAVAAGEFHSLYLSNSGHL-YSCGNND 362
KE HI V G S + +GHL Y CG D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGID 35
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 267 KESDHIQAVAAGEFHSLYLSNSGHL-YSCGNND 362
KE HI V G S + +GHL Y CG D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGID 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,760,383
Number of Sequences: 5004
Number of extensions: 82490
Number of successful extensions: 220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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