Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_B17
         (467 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8SY98 Cluster: RH14088p; n=1; Drosophila melanogaster|...    51   1e-05
UniRef50_P83731 Cluster: 60S ribosomal protein L24; n=72; Fungi/...    45   7e-04
UniRef50_Q8JGR4 Cluster: 60S ribosomal protein L24; n=6; Metazoa...    42   0.005
UniRef50_A7T293 Cluster: Predicted protein; n=7; Nematostella ve...    40   0.036
UniRef50_Q0ULI2 Cluster: Predicted protein; n=12; Pezizomycotina...    38   0.14 
UniRef50_P24000 Cluster: 60S ribosomal protein L24-B; n=22; Fung...    33   4.1  

>UniRef50_Q8SY98 Cluster: RH14088p; n=1; Drosophila
           melanogaster|Rep: RH14088p - Drosophila melanogaster
           (Fruit fly)
          Length = 123

 Score = 50.8 bits (116), Expect = 1e-05
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +2

Query: 107 RTQKFQRAXVGASLSDIMAKRNMKPEV 187
           RTQKFQRA VGASL++I+AKRNMKPEV
Sbjct: 33  RTQKFQRAIVGASLAEILAKRNMKPEV 59



 Score = 44.0 bits (99), Expect = 0.002
 Identities = 20/30 (66%), Positives = 22/30 (73%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKRTSXDPK 117
           KVTWTVLYRRK +KG EE  +KKRT    K
Sbjct: 7   KVTWTVLYRRKHRKGIEEEASKKRTRRTQK 36


>UniRef50_P83731 Cluster: 60S ribosomal protein L24; n=72;
           Fungi/Metazoa group|Rep: 60S ribosomal protein L24 -
           Homo sapiens (Human)
          Length = 157

 Score = 45.2 bits (102), Expect = 7e-04
 Identities = 21/27 (77%), Positives = 22/27 (81%)
 Frame = +2

Query: 107 RTQKFQRAXVGASLSDIMAKRNMKPEV 187
           R  KFQRA  GASL+DIMAKRN KPEV
Sbjct: 74  RAVKFQRAITGASLADIMAKRNQKPEV 100



 Score = 40.3 bits (90), Expect = 0.021
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKRT 102
           ++ WTVLYRRK KKGQ E   KKRT
Sbjct: 48  QINWTVLYRRKHKKGQSEEIQKKRT 72


>UniRef50_Q8JGR4 Cluster: 60S ribosomal protein L24; n=6;
           Metazoa|Rep: 60S ribosomal protein L24 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 157

 Score = 42.3 bits (95), Expect = 0.005
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = +2

Query: 107 RTQKFQRAXVGASLSDIMAKRNMKPEV 187
           R  KFQRA  GASL++I+AKRN KPEV
Sbjct: 74  RAVKFQRAITGASLAEILAKRNQKPEV 100



 Score = 41.5 bits (93), Expect = 0.009
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKRT 102
           ++ WTVLYRRK KKGQ E  +KKRT
Sbjct: 48  QINWTVLYRRKHKKGQSEEVSKKRT 72


>UniRef50_A7T293 Cluster: Predicted protein; n=7; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 143

 Score = 39.5 bits (88), Expect = 0.036
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKRTSXDPK 117
           +VTWTVLYR K KKG +E  +KKRT  + K
Sbjct: 28  EVTWTVLYRCKHKKGTQEEVSKKRTRRNIK 57



 Score = 39.1 bits (87), Expect = 0.047
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +2

Query: 107 RTQKFQRAXVGASLSDIMAKRNMKPEV 187
           R  KFQR+  GASL +I+AKRN KPEV
Sbjct: 54  RNIKFQRSVQGASLDNILAKRNQKPEV 80


>UniRef50_Q0ULI2 Cluster: Predicted protein; n=12;
           Pezizomycotina|Rep: Predicted protein - Phaeosphaeria
           nodorum (Septoria nodorum)
          Length = 161

 Score = 37.5 bits (83), Expect = 0.14
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKRT 102
           K++WT LYRR  KKG  E  AKKRT
Sbjct: 48  KISWTTLYRRMHKKGISEEVAKKRT 72



 Score = 31.5 bits (68), Expect = 9.5
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 107 RTQKFQRAXVGASLSDIMAKRNMKPE 184
           RT K QRA VGASL  I  +R+ +PE
Sbjct: 74  RTVKHQRAIVGASLDVIKERRSQRPE 99


>UniRef50_P24000 Cluster: 60S ribosomal protein L24-B; n=22;
           Fungi/Metazoa group|Rep: 60S ribosomal protein L24-B -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 155

 Score = 32.7 bits (71), Expect = 4.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKRT 102
           ++ WTVL+R+  KKG  E  AKKR+
Sbjct: 48  RIAWTVLFRKHHKKGITEEVAKKRS 72


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,078,196
Number of Sequences: 1657284
Number of extensions: 2469960
Number of successful extensions: 4054
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4054
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25610991215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)