Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_B17
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    38   8e-04
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    38   8e-04
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3...    25   5.8  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.6  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKRT 102
           +++WTVLYRR  KKG  E  AKKRT
Sbjct: 48  RLSWTVLYRRMHKKGISEEHAKKRT 72



 Score = 33.5 bits (73), Expect = 0.016
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = +2

Query: 107 RTQKFQRAXVGASLSDIMAKRNMKPEV 187
           RT K QR  VGA+L  I  KRN +PEV
Sbjct: 74  RTVKHQRGIVGANLDVIKEKRNQRPEV 100


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKRT 102
           +++WTVLYRR  KKG  E  AKKRT
Sbjct: 48  RLSWTVLYRRMHKKGISEEHAKKRT 72



 Score = 33.5 bits (73), Expect = 0.016
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = +2

Query: 107 RTQKFQRAXVGASLSDIMAKRNMKPEV 187
           RT K QR  VGA+L  I  KRN +PEV
Sbjct: 74  RTVKHQRGIVGANLDVIKEKRNQRPEV 100


>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
          L31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 13 GGILXKVTWTVLYRRKFKKGQ 75
          GG++ KV W +  RRK++  Q
Sbjct: 13 GGLVHKVPWRLSQRRKYRHRQ 33


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 225 FAALMACSLCALRTSGFILRLAIMSLSEAPT 133
           +  L ACS C + TS       I S S AP+
Sbjct: 105 YFTLQACSTCTISTSSLSYSGTISSTSIAPS 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 940,740
Number of Sequences: 5004
Number of extensions: 10551
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)