Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_B17
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    29   2.5  
05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    29   2.5  
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    29   2.5  
03_01_0649 + 4757352-4758167                                           27   10.0 

>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKR 99
           K+TWT +YR++ KK       KKR
Sbjct: 76  KLTWTAMYRKQHKKDIHAEAVKKR 99


>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKR 99
           K+TWT +YR++ KK       KKR
Sbjct: 50  KLTWTAMYRKQHKKDIHAEAVKKR 73



 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 107 RTQK--FQRAXVGASLSDIMAKRNMKPEV 187
           RT K  + R+ VGASL  I  KR  KPEV
Sbjct: 75  RTTKKPYSRSIVGASLEVIQKKRAEKPEV 103


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 28   KVTWTVLYRRKFKKGQEEXQAKKR 99
            K+TWT +YR++ KK       KKR
Sbjct: 1060 KLTWTAMYRKQHKKDIHAEAVKKR 1083



 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 107  RTQK--FQRAXVGASLSDIMAKRNMKPEV 187
            RT K  + R+ VGA+L  I  KR+ KPEV
Sbjct: 1085 RTTKKPYSRSIVGATLEVIQKKRSEKPEV 1113


>03_01_0649 + 4757352-4758167
          Length = 271

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 210 ACSLCALRTSGFILRLAIM 154
           ACS CALRT G +L  A++
Sbjct: 85  ACSPCALRTLGAVLAAALL 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,123,328
Number of Sequences: 37544
Number of extensions: 69277
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)