Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_B17
         (467 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M94314-1|AAC28251.1|  157|Homo sapiens ribosomal protein L30 pro...    45   1e-04
CR456729-1|CAG33010.1|  157|Homo sapiens RPL24 protein.                45   1e-04
BC070193-1|AAH70193.1|  157|Homo sapiens ribosomal protein L24 p...    45   1e-04
BC000690-1|AAH00690.1|  157|Homo sapiens ribosomal protein L24 p...    45   1e-04
AB061828-1|BAB79466.1|  157|Homo sapiens ribosomal protein L24 p...    45   1e-04
AL158815-1|CAI19461.1|  128|Homo sapiens se, the PEX6 gene for p...    43   6e-04

>M94314-1|AAC28251.1|  157|Homo sapiens ribosomal protein L30
           protein.
          Length = 157

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 21/27 (77%), Positives = 22/27 (81%)
 Frame = +2

Query: 107 RTQKFQRAXVGASLSDIMAKRNMKPEV 187
           R  KFQRA  GASL+DIMAKRN KPEV
Sbjct: 74  RAVKFQRAITGASLADIMAKRNQKPEV 100



 Score = 40.3 bits (90), Expect = 0.003
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKRT 102
           ++ WTVLYRRK KKGQ E   KKRT
Sbjct: 48  QINWTVLYRRKHKKGQSEEIQKKRT 72


>CR456729-1|CAG33010.1|  157|Homo sapiens RPL24 protein.
          Length = 157

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 21/27 (77%), Positives = 22/27 (81%)
 Frame = +2

Query: 107 RTQKFQRAXVGASLSDIMAKRNMKPEV 187
           R  KFQRA  GASL+DIMAKRN KPEV
Sbjct: 74  RAVKFQRAITGASLADIMAKRNQKPEV 100



 Score = 40.3 bits (90), Expect = 0.003
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKRT 102
           ++ WTVLYRRK KKGQ E   KKRT
Sbjct: 48  QINWTVLYRRKHKKGQSEEIQKKRT 72


>BC070193-1|AAH70193.1|  157|Homo sapiens ribosomal protein L24
           protein.
          Length = 157

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 21/27 (77%), Positives = 22/27 (81%)
 Frame = +2

Query: 107 RTQKFQRAXVGASLSDIMAKRNMKPEV 187
           R  KFQRA  GASL+DIMAKRN KPEV
Sbjct: 74  RAVKFQRAITGASLADIMAKRNQKPEV 100



 Score = 40.3 bits (90), Expect = 0.003
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKRT 102
           ++ WTVLYRRK KKGQ E   KKRT
Sbjct: 48  QINWTVLYRRKHKKGQSEEIQKKRT 72


>BC000690-1|AAH00690.1|  157|Homo sapiens ribosomal protein L24
           protein.
          Length = 157

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 21/27 (77%), Positives = 22/27 (81%)
 Frame = +2

Query: 107 RTQKFQRAXVGASLSDIMAKRNMKPEV 187
           R  KFQRA  GASL+DIMAKRN KPEV
Sbjct: 74  RAVKFQRAITGASLADIMAKRNQKPEV 100



 Score = 40.3 bits (90), Expect = 0.003
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKRT 102
           ++ WTVLYRRK KKGQ E   KKRT
Sbjct: 48  QINWTVLYRRKHKKGQSEEIQKKRT 72


>AB061828-1|BAB79466.1|  157|Homo sapiens ribosomal protein L24
           protein.
          Length = 157

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 21/27 (77%), Positives = 22/27 (81%)
 Frame = +2

Query: 107 RTQKFQRAXVGASLSDIMAKRNMKPEV 187
           R  KFQRA  GASL+DIMAKRN KPEV
Sbjct: 74  RAVKFQRAITGASLADIMAKRNQKPEV 100



 Score = 40.3 bits (90), Expect = 0.003
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKRT 102
           ++ WTVLYRRK KKGQ E   KKRT
Sbjct: 48  QINWTVLYRRKHKKGQSEEIQKKRT 72


>AL158815-1|CAI19461.1|  128|Homo sapiens se, the PEX6 gene for
           peroxisomal biogenesis factorA, member 8) protein.
          Length = 128

 Score = 42.7 bits (96), Expect = 6e-04
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = +2

Query: 107 RTQKFQRAXVGASLSDIMAKRNMKPEV 187
           R  KFQRA  GASL+DI AKRN KPEV
Sbjct: 74  RAVKFQRAITGASLADITAKRNQKPEV 100



 Score = 40.3 bits (90), Expect = 0.003
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = +1

Query: 28  KVTWTVLYRRKFKKGQEEXQAKKRT 102
           ++ WTVLYRRK KKGQ E   KKRT
Sbjct: 48  QINWTVLYRRKHKKGQSEEIQKKRT 72


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,902,674
Number of Sequences: 237096
Number of extensions: 390971
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)