Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_B16
(861 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 153 4e-38
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 121 1e-28
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 119 5e-28
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 72 1e-13
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 71 3e-13
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 42 9e-05
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 38 0.002
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 33 0.052
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 4.5
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 26 6.0
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 7.9
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 153 bits (370), Expect = 4e-38
Identities = 74/164 (45%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Frame = +1
Query: 13 FSRVEPAHKSXLVXSLHXMNDLSAMTGXGVNXAPALNXAEXGIAMG-SGTAVAKSAAEMV 189
F+R P HK +V +L + D+ AMTG GVN APAL A+ GIAMG GT VAK AA+M+
Sbjct: 600 FARTTPQHKMKIVEALQSLGDVVAMTGDGVNDAPALKLADIGIAMGRQGTDVAKEAADMI 659
Query: 190 LADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGLPEALIPVQLLW 369
L DD+F++I++AVEEG+ I+NN+K FI + +S+++ + I +++ G L +Q+LW
Sbjct: 660 LTDDSFATILSAVEEGKGIFNNIKNFITFQLSTSVAALSLIAISSVFGFQNPLNAMQILW 719
Query: 370 VNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYM 501
+N++ DG PA +LG D D+M KPPR + +IS L R +
Sbjct: 720 INILMDGPPAQSLGVESVDEDVMMKPPRPRNAPIISVQLLQRVL 763
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 121 bits (292), Expect = 1e-28
Identities = 63/158 (39%), Positives = 96/158 (60%), Gaps = 6/158 (3%)
Frame = +1
Query: 16 SRVEPAHKSXLVXSLHXMNDLSAMTGXGVNXAPALNXAEXGIAMG-SGTAVAKSAAEMVL 192
+R P K ++ +LH AMTG GVN +P+L A GIAMG +G+ VAK A+++VL
Sbjct: 677 ARCAPQTKVKMIEALHRRKAFVAMTGDGVNDSPSLKQANVGIAMGQNGSDVAKDASDIVL 736
Query: 193 ADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGLPEAL-----IPV 357
DDNFSSIV A+EEGR +++N+ +F+ +L+ SN+GEV+ + + A L PV
Sbjct: 737 TDDNFSSIVNAIEEGRRMFDNIMRFVLHLLVSNVGEVILLVVGLAFRDEVHLSVFPMSPV 796
Query: 358 QLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGL 471
++LW N++T P+ LG D+M++ P G+
Sbjct: 797 EILWCNMITSSFPSMGLGMELAQPDVMERLPHDNKVGI 834
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 119 bits (287), Expect = 5e-28
Identities = 63/157 (40%), Positives = 94/157 (59%), Gaps = 3/157 (1%)
Frame = +1
Query: 16 SRVEPAHKSXLVXSLHXMNDLSAMTGXGVNXAPALNXAEXGIAMG-SGTAVAKSAAEMVL 192
+R P K L+ L + ++ A+TG G N APAL A G +MG SGT VAK A++++L
Sbjct: 855 ARSSPLDKQLLIEGLQKLGNVVAVTGDGTNDAPALKKANVGFSMGKSGTEVAKEASDIIL 914
Query: 193 ADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGLPEA--LIPVQLL 366
DDNFSSIV A+ GR + + +K+F+++ I+ NI V ++A ++ L VQLL
Sbjct: 915 MDDNFSSIVKAIAWGRTVNDAVKKFLQFQITVNITAVFLTIISAVASTDQSSVLTAVQLL 974
Query: 367 WVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLIS 477
WVNL+ D L A AL +PP +++ + P K L +
Sbjct: 975 WVNLIMDTLAALALATDPPTPEVLKRKPEKPGASLFT 1011
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 71.7 bits (168), Expect = 1e-13
Identities = 43/122 (35%), Positives = 68/122 (55%)
Frame = +1
Query: 1 SAGRFSRVEPAHKSXLVXSLHXMNDLSAMTGXGVNXAPALNXAEXGIAMGSGTAVAKSAA 180
+A F V P HK +V L L AMTG GVN AP+L A+ GIA+ T A+SAA
Sbjct: 601 AADGFGEVFPQHKYAVVDILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGATDAARSAA 660
Query: 181 EMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGLPEALIPVQ 360
++V S+I+ A++ R I++ M ++ Y I+ ++ + IFL L + L+ ++
Sbjct: 661 DIVFLAPGLSAIIDALKTSRQIFHRMYSYVVYRIALSLH--LEIFLGLWLIIRNQLLNLE 718
Query: 361 LL 366
L+
Sbjct: 719 LV 720
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 70.5 bits (165), Expect = 3e-13
Identities = 42/122 (34%), Positives = 69/122 (56%)
Frame = +1
Query: 1 SAGRFSRVEPAHKSXLVXSLHXMNDLSAMTGXGVNXAPALNXAEXGIAMGSGTAVAKSAA 180
+A F+ V P HK +V L L AMTG GVN AP+L A+ GIA+ + A+SAA
Sbjct: 689 AADGFAEVFPQHKYAVVDILQQRGYLVAMTGDGVNDAPSLKKADAGIAVEGASDAARSAA 748
Query: 181 EMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGLPEALIPVQ 360
++V S+I+ A++ R I++ M ++ Y I+ ++ + IFL L + L+ ++
Sbjct: 749 DIVFLAPGLSAIIDALKTSRQIFHRMYAYVVYRIALSLH--LEIFLGLWLIIRNQLLNLE 806
Query: 361 LL 366
L+
Sbjct: 807 LI 808
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 42.3 bits (95), Expect = 9e-05
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +1
Query: 13 FSRVEPAHKSXLVXSLHXMNDLSAMTGXGVNXAPALNXAEXGIAMGSGTAVAKSAAEMVL 192
++ P+ K+ ++ L AM G G+N +P+L A+ GIA +G+ +A +A+++L
Sbjct: 715 YAEAVPSQKAEIIQKLKDQKHCVAMVGDGINDSPSLVLADVGIAPINGSGIALESADVIL 774
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 37.9 bits (84), Expect = 0.002
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 2/148 (1%)
Frame = +1
Query: 13 FSRVEPAHKSXLVXSLHXMNDLSAMTGXGVNXAPALNXAEXGIAMGSGTAVAKSAAEMVL 192
F+R+ P+ K+ LV +N G G N AL A+ GI++ A A AA
Sbjct: 988 FARMSPSEKNELVSCFQNLNYCVGFCGDGANDCGALKAADVGISLSE--AEASVAAPFTS 1045
Query: 193 ADDNFSSIVAAVEEGRAIYNNMKQFIRYL-ISSNIGEV-VSIFLTAALGLPEALIPVQLL 366
+ ++ +++GRA +Y+ + S I + VSI T L + Q L
Sbjct: 1046 KWFEITCVLDVIKDGRAALVTSFSCFQYMALYSAIQFITVSILYTTNSNLGD----FQFL 1101
Query: 367 WVNLVTDGLPATALGFNPPDLDIMDKPP 450
+++LV A +G + P + K P
Sbjct: 1102 FIDLVIILPIAVFMGRSRPYHRLAHKRP 1129
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 33.1 bits (72), Expect = 0.052
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 13 FSRVEPAHKSXLVXSLHXMNDLSAMTGXGVNXAPALNXAEXGIAM 147
++RV P+ K ++ +L ++ M G G N AL A G+A+
Sbjct: 797 YARVSPSQKEFMISTLKHNGYITLMCGDGTNDVGALKQAHVGVAL 841
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 669 SPDDDGSLSAGHNRXVKRHEQ 731
SPDD LSAG +R V HEQ
Sbjct: 587 SPDDRYILSAGRDRLVCLHEQ 607
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 26.2 bits (55), Expect = 6.0
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +1
Query: 151 SGTAVAKSAAEMVLADDNFSSIVAAVEEGRAIYN---NMKQFIRYLISSNIGEVVSIFLT 321
SG+ KS + D +S+V +++ +++ N+ + + Y IG++ S FL
Sbjct: 274 SGSLAQKSLRRLFPCD---TSMVVVIDDRGDVWDWNPNLIKVVPYEFFVGIGDINSNFLA 330
Query: 322 AALGLP--EALIPVQL 363
+ LP E LIP+++
Sbjct: 331 KSTPLPEQEQLIPLEI 346
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -2
Query: 242 ARPSSTAATMEEKLSSANTISAADFATAVPDPMAIPXSAXFRAGAXFTPXPVMAERS 72
A ++T T +SA + SAAD A A P+ ++ ++ TP P A S
Sbjct: 250 AASTNTNGTAGGTSASAKSTSAADQAVASSKPIKKAWASVAKSKKKVTPAPAPAPES 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,937
Number of Sequences: 5004
Number of extensions: 53372
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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