Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_B14
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 151 1e-37
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 113 2e-26
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 111 1e-25
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 35 0.018
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 27 3.6
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 4.8
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 4.8
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 6.4
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 151 bits (366), Expect = 1e-37
Identities = 94/270 (34%), Positives = 139/270 (51%), Gaps = 17/270 (6%)
Frame = +1
Query: 142 MIHSLFIINPSGDVFLEKHWRSVIPRSVCDYYLEAQRASPNDV---PPVLAAPHHYLISI 312
M ++F++N G V + + +R+ IP SV + +L + + P L I I
Sbjct: 1 MASAIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYI 60
Query: 313 HRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDN 492
H V L+A+ K + ++ FL ++ D F DYF + E I++N+V+VYELLDE++D
Sbjct: 61 HHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDF 120
Query: 493 GFPLATESNILKELIKPPNILRTIANTVTGKSNVSSTLPSGQLSNVPWRRSGVKYANNEA 672
GFP TE+ IL+E I +NTV K + P + + WR G+ Y NE
Sbjct: 121 GFPQTTETKILQEYI------TQTSNTV--KKHAPP--PIAMTNAISWRSEGIHYRKNEV 170
Query: 673 YFDVVEEVDAIIDKSGATVNAEIQGYIDCCIKLSGMPDLTLTFVNPRLF----------- 819
+ DV+E V+ I G + +EI G + LSGMP+L L + LF
Sbjct: 171 FLDVIESVNLIAAADGTVIQSEILGKVRLKCYLSGMPELRLGLNDKVLFEAAGRTIKGNT 230
Query: 820 ---DDVSFHPCVRXKRWEAERILSFIPPDG 900
+DV FH CVR R+E +R +SFIPPDG
Sbjct: 231 VEMEDVKFHQCVRLARFENDRTISFIPPDG 260
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 113 bits (273), Expect = 2e-26
Identities = 80/284 (28%), Positives = 132/284 (46%), Gaps = 31/284 (10%)
Frame = +1
Query: 142 MIHSLFIINPSGDVFLEKHWRSVIPRSVCDYYLEAQRASPNDVPPVLAAPHHYLISIHRG 321
MI LFI N GD + K +R + +SV + + A + + P+++ I
Sbjct: 1 MISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAILTNTDYRHPIVSIGSSTYIYTKHE 60
Query: 322 GVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNGFP 501
+ +VA+ K + V+EFL ++ YF E +K+N ++ELLDEM+D G
Sbjct: 61 DLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYGII 120
Query: 502 LATESNILKELIKPPNILRTIANTVTGKSNVSSTLP---SGQL-SNVPWRRSGVKYANNE 669
TE + L + + + N ++ K + SS L S ++ +VPWRR+G+KY N
Sbjct: 121 QTTEPDALARSVSITAVKKK-GNALSLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNS 179
Query: 670 AYFDVVEEVDAIIDKSGATVNAEIQGYI----------DCCIKLSGMPDLTL-------- 795
Y D+VE ++ +I +G + +++ G + +C L+ D L
Sbjct: 180 IYIDIVERMNLLISSTGNVLRSDVSGVVKMRAMLSGMPECQFGLNDKLDFKLKQSESKSK 239
Query: 796 --TFVNPR-------LFDDVSFHPCVRXKRWEAERILSFIPPDG 900
NP + +D FH CVR +E E ++FIPPDG
Sbjct: 240 SNNSRNPSSVNGGFVILEDCQFHQCVRLPEFENEHRITFIPPDG 283
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 111 bits (267), Expect = 1e-25
Identities = 64/215 (29%), Positives = 106/215 (49%), Gaps = 2/215 (0%)
Frame = +1
Query: 262 NDVPPVLAAPHHYLISIH-RGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETI 438
N+ PP + ++LI V L + PL++ + + R+VD + +F +
Sbjct: 45 NEEPPFILHNKNFLIFQELEEDVRLCIPTTCDTEPLYIHDIMRRIVDVVKTFFGGFNASK 104
Query: 439 IKENYVVVYELLDEMLDNGFPLATESNILKELIKPPNILRTIANTVTGKSNVSSTLPSGQ 618
+++N V+ +LL EM+D G+ E N L++++ P+ + VTG + TL
Sbjct: 105 VEKNVCVIVQLLAEMIDYGYATCMEPNALQDIVPLPSFMNKFM-AVTGLQTNTPTLAR-- 161
Query: 619 LSNVPWRRSGVKYANNEAYFDVVEEVDAIIDKSGATVNAEIQGYIDCCIKLSGMPDLTLT 798
VPWR + KYA NE + V+E V A+ +G ++ ++C ++SGMP L L+
Sbjct: 162 -DTVPWRTAKAKYATNEFFIHVLERVSAVYQPNGKLAFGTVKSDMECKCQISGMPLLLLS 220
Query: 799 FVNPRLFDDVSFHPCVRXKRWEAE-RILSFIPPDG 900
+V FH V KRW+ + FIPPDG
Sbjct: 221 LRPGTKLGNVRFHQSVNLKRWKQHPDQIEFIPPDG 255
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 34.7 bits (76), Expect = 0.018
Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +1
Query: 310 IHRGGVALVAVC--KQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEM 483
++R +L VC +Q+ L ++E +H+ V+ YF + E + N+ Y +++E+
Sbjct: 59 VYRRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEEL 118
Query: 484 LDNG-FPLATESNILKELI 537
L G ++++N+L ++
Sbjct: 119 LLAGELQESSKTNVLSAVL 137
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 391 VVDTFQDYFSDCTETII 441
+VDTF+DY DC E ++
Sbjct: 562 IVDTFRDYIVDCIEHMV 578
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 775 GMPDLTLTFVNPRLFDDVSFHPCVRXKRWEAERILSFIPPDG 900
G+ D T++F+ + V F + W A+ IL I P G
Sbjct: 92 GLSDATVSFIKENNIELVPFQLTLDYDYWRADDILDAILPPG 133
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 620 SCPDGSVEDTFDFPVTVLAIVLKIFGGLINSF-NILLSVAS 501
SCP G+V D F + KI GLI + +LL + S
Sbjct: 511 SCPSGNVNDLMRFETEKARVEAKIVEGLIIHWPEVLLKINS 551
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +1
Query: 364 LFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDN 492
+F E LH + D+ + + + +Y +VY+LLD ++ +
Sbjct: 22 IFYSERLHAIEDSNESLYLLAYSHFLNLDYNIVYDLLDRVISH 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,684,701
Number of Sequences: 5004
Number of extensions: 75870
Number of successful extensions: 208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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