Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_B13
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    41   3e-04
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    27   2.8  
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    27   3.7  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   6.5  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   6.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   8.6  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +1

Query: 277 KLEHPN--SDVRSFANLLKSSLGSGILAMPAAFKNAGTIVGIFGTIILGYICTHCVYLLV 450
           KL+ P   S+ ++   LLKS +G+G+L +P AFK  G +      +I+G +   C  LL+
Sbjct: 268 KLQTPGNASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHICFLLLI 327

Query: 451 KTSQDV 468
           +T   V
Sbjct: 328 QTRMKV 333


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 34  ASVSTXKQLXNYAL*AQKIKVPVLIVFEWKMANSYNMKXFSSTAVITGN 180
           A+VS  + L N AL   + + PV+    +++  SY  K F+ + ++TGN
Sbjct: 156 ANVSAARALMNRALRLNQ-ENPVIWAAYFRLELSYMTKLFARSQILTGN 203


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 596 LLFLALVLYMSFYLWSQFSRSSIISTQTMASTKQCTALCS*YPFLFSL 739
           L+F+ + + ++ Y W+ F+   ++    + S K+  A+   + F FSL
Sbjct: 173 LIFIRIPVIVAMYAWTLFAAMGVLQNSNL-SNKKLLAVYPLFLFYFSL 219


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 696 NVLPYVPSTHSYFHSNKKSKVLSSVFGIRQYSS 794
           N LPY+P T        KS V +S+ G   +SS
Sbjct: 270 NALPYLPQTEEKNDKLYKSSVPASIAGAEGWSS 302


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 386  IVPAFLNAAGIAKMPDPRDDFKRFANDLTSELGCSNF 276
            ++P FLN+ G A     + D +     L  + GC +F
Sbjct: 1242 VLPLFLNSLGDATHTKAKGDIEHKVYQLLKDQGCEDF 1278


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 633 TCGVSSADRRLFLRRQWHQRNNVLPYVPS 719
           TC     DR L LR ++ +R+ +L ++P+
Sbjct: 679 TCLKDRVDRELTLRNEFRKRHPLLTWIPT 707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,631,254
Number of Sequences: 5004
Number of extensions: 75900
Number of successful extensions: 247
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)