Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_B12
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   1.8  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    26   3.2  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   4.3  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   5.6  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   7.4  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   7.4  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   7.4  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 167  EAPWLRCLSSLCKLNQLASKRSFC*CXYL 81
            +AP L  LS++C  +  + KR FC   YL
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFCKENYL 995


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -1

Query: 358 VIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLCSKFL 182
           +++ T  +KL  D  H   L IP S    F+E   + V   CD D      + LC ++L
Sbjct: 207 ILWDTSDNKLGTDGTHVQELPIPESHMERFIEARNALVMSLCDVD------ETLCDEYL 259


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 226 QSHTLGQRTTCTPPESCSKVKKE*LTNM-HENHQLLIYV 339
           QSH L    + TP  +   ++ E L+NM H NH +L YV
Sbjct: 270 QSHPLSSVASGTPSANAILLE-ELLSNMLHANHPILDYV 307


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 214 RISRQSHTLGQRTTCTPPESCSKVKK 291
           ++ ++S     +T  TPP+ CS +KK
Sbjct: 36  QMKKESLAASVKTPSTPPKECSHLKK 61


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 207 NVTNLTSESHLGPTDDLHTSRKLFQS 284
           +V+ L+S SHL PT    +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 158 KVLRRSLKQEFRAEALKRDESHVRVTPWANGRPAHL 265
           K  + S  + FR     RD+   +  P +N  P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 304 WLTIPSSLWNSFLEVCR 254
           WL+IP+S W++F +  +
Sbjct: 507 WLSIPASRWSTFYDASK 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,482
Number of Sequences: 5004
Number of extensions: 25159
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)