Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_B10
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   2.2  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.9  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    27   3.9  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   6.8  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    26   6.8  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.0  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 293 SKILKFGQAPT--SILRLMDKQYPSICG 370
           S +LKF  A T  S +R +  +YPS+CG
Sbjct: 485 SNLLKFTSAETTSSAIRKVQSKYPSMCG 512


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 16  INNKRPVSSHVMMSEFLA--QAEKXIDPCEGCYAMGKLVNPTDVVGSGLIQESYTY 177
           I    P +   M+ EFL+    E+ +D C   Y M + +N  D     LI  S ++
Sbjct: 701 IRTASPSTREQMLQEFLSFPNIEQLLDDCYANYVMQRFLNVADESQKFLILRSISH 756


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/76 (23%), Positives = 29/76 (38%)
 Frame = +1

Query: 79  KXIDPCEGCYAMGKLVNPTDVVGSGLIQESYTYSTIINAVLIWQPPPETDKNKKRISFQD 258
           K  D C+   A  ++ +   V+ + L Q  Y Y   +   + W       K     + + 
Sbjct: 147 KAADICQMLIATERIEHENSVLNTQLKQADYIYPHGLTTPMHWVRQKRFRKRVSNRTIEA 206

Query: 259 LEKEVHLLTRMFENIE 306
           +E EV  L  M E  E
Sbjct: 207 VENEVDRLLAMDERAE 222


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +1

Query: 394 DDMKIAY---VYVNHPNESDADIWCDGTSAEECNELLNFK 504
           DDM+ A+   V  +   + +AD+  +G+ A + +ELLN +
Sbjct: 639 DDMRKAFSSLVAQSDKRQKEADLLVNGSDAVQADELLNIR 678


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 155 SPLPTTSVGFTSLPIA*QPSQGSXLFSA*ARNSDIITCED 36
           +PLP +S+G+   P +    +GS +F A    S+ +   D
Sbjct: 135 APLPPSSIGYVLPPSSLANGEGSSMFDADMTTSNAVAHGD 174


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +1

Query: 424 NHPNESDADIWCDGTSAEECNELLNFKLDKYAYCCDI 534
           N P + DA+ W   T+ E  + +   K     Y C +
Sbjct: 311 NLPMQEDAETWLQKTTVEHPDSVEGIKNQNVCYGCSV 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,875
Number of Sequences: 5004
Number of extensions: 60932
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)