Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_B06
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   0.65 
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    26   2.0  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    25   3.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   3.5  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    25   4.6  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    24   6.1  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    24   6.1  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.5 bits (58), Expect = 0.65
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 142 ENLPFDIHNRYKLTLYFILYAGSGLSAPYLITALKF 249
           E   F+++N Y LTL+ I++      AP++   + F
Sbjct: 472 EKRSFEVNNMYSLTLFDIIFKSGMKIAPFISMFITF 507


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 22  YSSNRRNVKMITPLTRISNKLGRNVVTNFVR--NHSNGGIPGE 144
           YS+N  N  ++T L  I N +GR  + N  R  N +N  IP E
Sbjct: 301 YSTNCMNDSLLTRLEGIGNAIGR--IGNAFRGANDNNNNIPLE 341


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -3

Query: 122 EWFLTKFVTTFLPNLFEMR---VNGVIIFTFLRLL 27
           +WF TK  +  LP++F++R    +G+++   L ++
Sbjct: 16  KWFNTKLSSRDLPSVFDLRKDLSDGILLIQLLEII 50


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 177 LVTVVNVEG*ILARNTAVRMVSHEIRYHISAQFV 76
           L+T  NV   +L R+  V ++  E  YHI  Q +
Sbjct: 233 LITGANVNTYLLERSRVVSLLKGERNYHIFYQLI 266


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 40  NVKMITPLTRISNKLGRN 93
           NVK +TP  RI N LG N
Sbjct: 134 NVKKLTPKARILNLLGYN 151


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 169 RYKLTLYFILYAGSGLS 219
           RY+LTLY +LY  S +S
Sbjct: 525 RYRLTLYIMLYTLSQIS 541


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 94  VVTNFVRNHSNGGIPGENLPF 156
           +    +RN ++ G P ENLPF
Sbjct: 204 IALQMIRNINDLGTPDENLPF 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,081,364
Number of Sequences: 5004
Number of extensions: 19818
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)