Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_B06
         (358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853...    28   2.5  
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911...    27   3.3  
03_06_0259 + 32712976-32714335,32714454-32714587,32714904-327151...    27   3.3  
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588...    27   5.7  

>07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,
            8530533-8530878,8530964-8531101,8531197-8531322,
            8531422-8531634,8531721-8531863,8531891-8532009,
            8532099-8532295,8532379-8532729,8532811-8533395
          Length = 1143

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 119  WFLTKFVTTFLPNLFEMRVNGVII 48
            WF++ F+  F+  + EMR +GV I
Sbjct: 957  WFMSLFICIFVTGILEMRWSGVAI 980


>11_04_0442 -
           17790811-17790889,17791047-17791114,17791144-17791166,
           17791210-17795913,17797414-17797624,17798478-17798666
          Length = 1757

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 162 SQPLQADIVFHPICGLWTISTLSHHCPKI 248
           S PL   +  H +   W++ST S HC ++
Sbjct: 548 SIPLLKYVNRHDVLSFWSLSTASQHCDRL 576


>03_06_0259 +
           32712976-32714335,32714454-32714587,32714904-32715144,
           32715254-32715462,32715522-32715583,32715690-32715801,
           32715916-32716208,32716400-32716520
          Length = 843

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 82  LGRNVVTNFV-RNHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITALKF 249
           LGR VVT  + RN   GG+PGE   F +  R  L + +  + G  + A   + A+++
Sbjct: 244 LGRKVVTVVLSRNRFTGGLPGEITSFYLLER--LDVSWNRFVGPFMPALLSLPAIRY 298


>07_01_0766 -
           5885207-5885791,5885874-5886224,5886252-5886269,
           5886339-5886541,5886632-5886890,5887052-5887264,
           5887357-5887482,5887590-5887727,5887817-5888162,
           5888254-5888520,5888983-5889172,5889264-5889363,
           5889444-5889694,5889990-5890182,5890313-5890336
          Length = 1087

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 119 WFLTKFVTTFLPNLFEMRVNGV 54
           WF++ F++ F   + EMR +GV
Sbjct: 901 WFISLFISIFATGILEMRWSGV 922


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,091,843
Number of Sequences: 37544
Number of extensions: 131835
Number of successful extensions: 314
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)