Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_B06
         (358 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83107-7|CAB05501.2|  537|Caenorhabditis elegans Hypothetical pr...    31   0.31 
Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical pr...    29   0.95 
AF106582-4|AAC78219.1|  456|Caenorhabditis elegans Hypothetical ...    26   8.9  

>Z83107-7|CAB05501.2|  537|Caenorhabditis elegans Hypothetical
           protein F32A7.6 protein.
          Length = 537

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 85  GRNVVTN-FVRNHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPY 228
           GRN   N FV    NGG+ G+N  +D +   + TL F +   SG  A Y
Sbjct: 264 GRNGKGNIFVWASGNGGVNGDNCAYDGYVSNEYTLSFGVIDASGAPAAY 312


>Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical
           protein F43A11.4 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 146 FSPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTFLR 33
           FSP   PL WF    +T  +  +F +  N +II +F+R
Sbjct: 3   FSPDADPLNWFAASVMT--INGVFGITCNTLIIASFIR 38


>AF106582-4|AAC78219.1|  456|Caenorhabditis elegans Hypothetical
           protein W05F2.6 protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +1

Query: 16  DTYSSNR-RNVKMITPLTRISNKLGRNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLYF 192
           D ++ N  R VKM+   TR + K   + V  FV    +     E L   + N +KL+ + 
Sbjct: 341 DWFAGNTWRAVKMMYMRTRDAEKHKNSEVKLFVEKLPDWST--EQLEEKLRNEFKLSDFQ 398

Query: 193 ILYAGSGLSAPYLITALKF 249
           +LY   G +    I  LK+
Sbjct: 399 LLYDYKGNNLRSAIVLLKY 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,032,057
Number of Sequences: 27780
Number of extensions: 114976
Number of successful extensions: 296
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)