Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_B05
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical ...    27   6.5  
AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical...    27   8.6  

>AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical
           protein F40A3.7 protein.
          Length = 409

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -3

Query: 190 FLTYLFHVSILMIKFFF*LVL*--SIFTFNFHYTIFYXKDKVIIKSL 56
           FL  L    I+ +   F  +L   S FTFN+++  FY   KV + SL
Sbjct: 61  FLAVLAFADIIFLFLLFPNILANYSFFTFNWYFRWFYLHSKVHLISL 107


>AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical
           protein Y73F8A.3 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 193 IFLTYLFHVSILMIKFFF*LVL*SIFTFNFHYTIFY 86
           I+   + H S L  K+F+  +L S  TF F+Y  +Y
Sbjct: 111 IYRYLVIHNSSLTKKYFYIYMLGSFITFAFYYFYWY 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,636,100
Number of Sequences: 27780
Number of extensions: 111352
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)