Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_B04
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0317 - 7414477-7414555,7414646-7414701,7415877-7416024,741... 31 0.93
04_04_0850 - 28697462-28697684,28697894-28697971,28698103-286984... 31 1.2
06_02_0367 - 15222703-15223088,15224761-15224826,15226748-15227048 30 2.8
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157... 30 2.8
12_02_0437 - 19084990-19087695 29 5.0
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27... 29 6.6
04_03_0379 + 15141127-15141231,15141566-15141769,15141856-151420... 29 6.6
04_03_0349 - 14738360-14738385,14738762-14738807,14738887-147391... 29 6.6
03_05_0472 - 24655384-24655764,24655904-24656119,24656197-246563... 28 8.7
02_05_0288 - 27549718-27549940,27550025-27550102,27550282-275506... 28 8.7
>03_02_0317 -
7414477-7414555,7414646-7414701,7415877-7416024,
7416376-7416380,7416512-7416594,7416707-7416878
Length = 180
Score = 31.5 bits (68), Expect = 0.93
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 224 MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQ 322
M+LQW I+A + E AV ++LTLP R Q
Sbjct: 1 MALQWMILACVVAAEAAVAVMLTLPAPRAVRKQ 33
>04_04_0850 -
28697462-28697684,28697894-28697971,28698103-28698495,
28698590-28698893,28698978-28699188,28699943-28700674
Length = 646
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 150 DEILRPRVTIDLKIEKILLCMTQTVTDGRLWXSQ 49
D ILRP T+ ++ + +L +++TDG W SQ
Sbjct: 584 DRILRPEGTVIIRDDVDMLVKIKSITDGMRWNSQ 617
>06_02_0367 - 15222703-15223088,15224761-15224826,15226748-15227048
Length = 250
Score = 29.9 bits (64), Expect = 2.8
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
Frame = +2
Query: 530 ISGFALFLLVVIRRLVQMISQLATLLAQSEANFXXXXXXXXXXXXLLEKQGTGEEQS--- 700
I G++LFL +VI RL I ++ L EA + ++
Sbjct: 121 IKGYSLFLALVIDRLHNYIREVRGLKRNLEAASKLNKTLDEAKLIGSSDESKTYQKDIAS 180
Query: 701 -KKEIEDLRTQIXXXXXXXXXXXXXXXAVKSQAEGLNKEYDXLAEXHSKLQKKL 859
+EI+ ++ Q+ A + Q+EGL EY+ L E + L +L
Sbjct: 181 LNEEIKKMKRQLKEKANEAKDAEAKALAAQKQSEGLMIEYNHLVEDNKHLHDQL 234
>04_04_0411 -
25014511-25015015,25015098-25015169,25015700-25015734,
25015805-25015873,25015993-25016044,25016444-25016526,
25016625-25016726,25017150-25017884,25017962-25018012,
25018792-25018983,25019066-25019216,25020012-25020193,
25020329-25020532,25020752-25020859
Length = 846
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 221 FHYFFNTVINYTMQQTIVEEQQTMTKFLGQE 129
FH+FF T+ N T Q+ ++ +T+ KF+ E
Sbjct: 157 FHHFFRTISN-THQENVITSMETVMKFVIDE 186
>12_02_0437 - 19084990-19087695
Length = 901
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 429 RCKNIQILNRQTTSISTPKCKVT-*DCFVHRETSTYLALHFSSLSSSVVWFK*FH 590
R KN+Q L+ + TS+S C++T C H ST L+ +S S +V + H
Sbjct: 626 RLKNLQTLHLRRTSVSELPCEITLLACLRHLSVST--DLYGTSFSGNVYGLRSLH 678
>06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-273343,
273427-274124,274921-274969,276059-276112,276244-276275,
276319-276484,276563-276628,276717-276812,276868-276957,
277302-277398,277496-277575,277709-277753,278006-278134,
278593-278722,278888-279222,279918-280053,280149-280328,
280422-280679,280752-281137
Length = 1409
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 150 DEILRPRVTIDLKIEKILLCMTQTVTDGRLWXSQ 49
D ILRP T+ + +L Q++T+G W SQ
Sbjct: 1346 DRILRPEGTVIFRDTVEVLVKIQSITEGMRWKSQ 1379
>04_03_0379 +
15141127-15141231,15141566-15141769,15141856-15142037,
15142898-15143036,15143111-15143299,15143943-15144050,
15144143-15144222,15144549-15144600,15144731-15144799,
15144876-15144910,15145351-15145510,15147414-15147470,
15147566-15147622,15147971-15148027,15148126-15148182,
15148551-15148670,15148760-15148996,15149550-15149591
Length = 649
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 221 FHYFFNTVINYTMQQTIVEEQQTMTKFL 138
FH+FF TV N T Q+ ++ +T+ KF+
Sbjct: 156 FHHFFRTVSN-THQEHVISYMETIMKFV 182
>04_03_0349 -
14738360-14738385,14738762-14738807,14738887-14739123,
14739213-14739332,14739702-14739758,14740262-14740318,
14740412-14740468,14742372-14742531,14742972-14743006,
14743083-14743151,14743282-14743333,14743660-14743739,
14743832-14743939,14744583-14744771,14744846-14744984,
14745845-14746026,14746113-14746316,14746651-14746755
Length = 640
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 221 FHYFFNTVINYTMQQTIVEEQQTMTKFL 138
FH+FF TV N T Q+ ++ +T+ KF+
Sbjct: 156 FHHFFRTVSN-THQEHVISYMETIMKFV 182
>03_05_0472 -
24655384-24655764,24655904-24656119,24656197-24656321,
24656432-24656621,24656817-24656911,24657230-24657454,
24657940-24658003
Length = 431
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 522 FLCARNNLMLPCISASRCWWSDGSIFE--YFCISRIASSRHNTSTPMR 385
F+CA +P +SA R W ++F Y I+ + S R +TP +
Sbjct: 151 FVCALFAFGIPYLSALRIWLGLSTVFSLIYIMIAFVMSLRDGITTPAK 198
>02_05_0288 -
27549718-27549940,27550025-27550102,27550282-27550674,
27550752-27551347,27552232-27552978
Length = 678
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 150 DEILRPRVTIDLKIEKILLCMTQTVTDGRLWXSQ 49
D ILRP T+ ++ + +L ++ DG W SQ
Sbjct: 616 DRILRPEGTVIIRDDVDMLVKVKSAADGMRWDSQ 649
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,429,744
Number of Sequences: 37544
Number of extensions: 359828
Number of successful extensions: 740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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