Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_A23
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    26   2.0  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    24   6.2  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    24   8.2  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 225 NLHFLHNGLKCTDNVCVKLKQKLSNH*TILLG 130
           N+ F+ NG+   +NVC KL  +  N  +I  G
Sbjct: 109 NILFVQNGMGAVENVCGKLWPEEQNKPSIYQG 140


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 197 FRPLCKKCKFC 229
           + P CK+CKFC
Sbjct: 95  YTPECKECKFC 105


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 173 FTQTLSVHFRPLCKK 217
           F+ TLS   RP+CKK
Sbjct: 235 FSATLSNEIRPICKK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 992,637
Number of Sequences: 5004
Number of extensions: 17149
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)