Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_A22
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...   166   3e-42
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    29   0.99 
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    28   1.3  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   5.3  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   5.3  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    26   7.0  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.2  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   9.2  

>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score =  166 bits (404), Expect = 3e-42
 Identities = 76/197 (38%), Positives = 117/197 (59%), Gaps = 8/197 (4%)
 Frame = +1

Query: 208 LDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKV 387
           L +++C++VDE D  +   TK+ECH +      LLHRAFS+F+F+++  + LQ+R+ +K+
Sbjct: 17  LMEEVCIVVDENDVPLRYGTKKECHLMENINKGLLHRAFSMFIFDEQNRLLLQQRAEEKI 76

Query: 388 TYPDYYTNACCSHPLYI--------DEKPEEIITAARRRMNHELGIPLDQLDPELFTFMT 543
           T+P  +TN CCSHPL +         E  E +  AA+R++ HELGI    +  + F F+T
Sbjct: 77  TFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLT 136

Query: 544 RVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFVPKAXFNSFLPTLEGPITP 723
           R+HY  P  G WGEHEID+ILFF+  V++  N +E+  Y +V            +   TP
Sbjct: 137 RIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYVTMEELKEMFSDPQYGFTP 196

Query: 724 WFNMIRRHRLKLWWDNL 774
           WF +I  H +  WW ++
Sbjct: 197 WFKLICEHFMFKWWQDV 213


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 223 CLLVDEKDNFIGTATKRECHKVGPDGDVLLH 315
           C++VDE DN I +A  R      PDGDV  H
Sbjct: 34  CIIVDENDNVIMSAGNRV-----PDGDVTQH 59


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
 Frame = +1

Query: 436 IDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRVHYHDPGDGV--WGEHEIDHILF 609
           ++ +PE  +     ++  +  I  D   P  F FM  V Y     G+       I +IL+
Sbjct: 263 VESRPELNVGTIDFKVGKDYWIKEDPPKPARFVFMIDVSYEASSKGLPKVAAEAIRNILY 322

Query: 610 FQSDVKVKPNSDEISEYCFVPKAXFNSFLPTLEGP 714
               V + PN  +I+  CF     F +  P LE P
Sbjct: 323 --GPVPLDPNV-KIAIVCFDRSVNFFNLSPNLEQP 354


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 529 FTFMTRVHYHDPGDGVW 579
           +TFMT  H+ +P +GVW
Sbjct: 543 WTFMTVQHWAEPPEGVW 559


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 311 SSTSPSGPTL*HSLFVAVPMKLSFSSTSRQISLSKASAWANSRPS 177
           SS+S S  +   S   +VP+  S SS+    S S +S+ ++SRPS
Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 235


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 770 LSHQSFNRWRRIMLNHGVIGPSKVGRNELNXALGTKQYSEISSEFGLTLTSL 615
           L+  SFN  R  + NH    PSK  +N ++     +     SS F L LT +
Sbjct: 187 LNTSSFNT-RSPLRNHNFSNPSKSSKNGVHTINNMQSSPSPSSSFLLPLTQI 237


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 686 LNXALGTKQYSEISSEFGLTLTSLWKNSMWSISCSPHTP 570
           L+  +    Y++I +EFG      W  + + ISC+   P
Sbjct: 104 LDNTIVASTYTKIGAEFGKFSQVSWTATAYMISCTAFQP 142


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 670 PKAXFNSFLPTLEGPITPWFNMI 738
           P+  F+ FLPT+E   + W+ ++
Sbjct: 478 PETFFDCFLPTIEAGNSQWWELL 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,250,824
Number of Sequences: 5004
Number of extensions: 67471
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)